LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g05069	ATGTATATTTTCTCTTCGAACGTGCATAATAAGCACACAAGTATATTGTTTTTTGTAGTTGGTATCTCAATTTTGTTGCATGGCATTCACGGTGCATGGATAGAGGAGCCAGGTTCATTGATATTGGGTTGTGGTTTGGATGAAGGGGGAGCCAAAGATGATGATGGAAGACAATGGAGTCCTGATAATAAGTTTGTGGCAGCAGACGCTGGTTCAATCACGTCTAAAGCCGCATACCAAGACCCTTCGCTCACCTCTGTGGTTCCATACATGTCAGCTAGAATTTTCACATCAGAAACAACATACAAATTTAATGTTCAACCTGATAAACGTTATTGGCTGAGGCTCCATTTTTATCCATCCCTTTATGGAAGTTACAACCCATATGATTCATATTTCTCAGTGGCAGCAAATGGGATTACCCTCCTCAGCAATTTCAGCGCTTACATAACTTGTGAGGCCCTCTCACAGGCTTACATTGATAGAGAGTATTCCCTTGCTCCTTTGAATTCAGATACTTTGACTCTTACATTTAAACCTTCTGACAAGCAAAATGGGGCTTTTGCTTTCGTCAATGGCATTCAGTTGATCCCAATGCCCGAGTTGTTTGACTCTGCTGCAATGGTCGGGTATGCCGACCAAAACGTAGACGTCAAAACCATGAGTTTGCAAACCATGTTTAGACTAAACGTTGGTGGGCAGTATGTGTCTCCAGCCCAAGATTCTGGCCTCTCGAGGATGTGGTATGATGACACACCTTACCTATATGGTGCATCCACTGGTGTCACCAACCAAGCTTCTAAGAATGTCCGAATCACCTACCCGAACATGCCACAATACATTGCTCCTCAAACTGTCTACGCCACATCAAGATCAATGGGAAATGATAAGAACGTTAACATGGGATACAACCTCACGTGGGTTTTCCAAGTTGATCCAAATTCCATGTACCTGGCGAGGTTGCATTTCTGTGATTATTATTATTCCAGGGTCAATGAGATTGTTTTCAATATCTTTGTCAACAACCAAACGGCAGAGGCTCAAGCTGATGTTATTGGGTGGACGGGAGGTAAAGGCATGGCAACTTACAAGGATTATGTGGTGTATGTACAAGACGGTGAAGGGGACGAGCAACTTTGGCTTGCACTGCATCCAACACCTGAGACAAAGCCAGAGTACTATGATGCCATACTCAATGGGGTAGAGATATTCAAGATTAATGACACGGACTTGTCTGGCCCTAATCCTCAGCCTTCAGACATGCTTCTCGAAGATCAAGCAAAGGAAACGGGTTTCCAAACACACAAATCATATGATAAGAAAGCTGTCATTGGGGGAGCTGCTGGAGGCGCTGCAGGTGTTGCCTTTATGGCAGCAATATGCATTGCTGTTTACCACAAGAAGAAAAGAGTTCCAGGGGCAGGGGGAGCCACACACACAAGTTGGCTTCCCATCTATGGAAATTCACACACAAATGGCAGTAAATCCACGTCGGGGAAGAGCATTGCCAGCGCAAACCTCGCTGCCATGGCTCAAGGTTTGTGTCGCTATTTTTCCTTGCAAGAGATAAAGCAAGCAACCAAAAATTTTGATGAGTCCAATGTTATTGGGGTTGGTGGATTTGGAAAGGTTTACAAGGGTGAAATTGATAACGGAGTGCTAGTGGCAATTAAGAGGTCAAATCCACAATCAGAACAAGGAGTCAATGAGTTCCAGACTGAGATAGAGATGCTTTCTAAGTTGAGACACAAGCATTTGGTGTCCTTGATTGGATTTTGTGAGGAAGATGATGAGATGTGCTTGGTTTATGACTACATGGCTCTTGGAACCTTTAGGGAACATTTGTATAAGGGCACCAAGCCTTTAAACATTTTAACGTGGAAGCAAAGATTGGAAATCTGCATTGGTGCTGCAAGAGGACTTCACTACCTTCACACAGGTGCCAAGTACACCATCATTCATAGAGATGTCAAAACAACAAATATTCTATTGGATGAAAACTGGAATGCCAAGGTATCAGATTTTGGGTTGTCAAAAACTGGTCCAGACTTGAACGCTGCTGGCCATGTTAGTACTGTGGTGAAGGGTAGTTTCGGCTACTTGGATCCTGAGTACTTTAGGAGGCAACAGTTGACTGAAAAGTCTGATGTCTACTCATTTGGGGTCGTACTCTTTGAAGCCCTTTGTGCCAGGCCTGTTCTGAATCCTAGTCTTCCAAAAGAACAAGTTAGTCTTGCGGATTGGGCATTGCTCTGCAACCAAAAAGGAACGCTAGAGGATATTATTGACCCCAATCTCAAGGGAACAATAAATCCAGAAAGTTTGAAGAAGTTTGTGGACACGGCTGAAAAGTGTTTGTCTGATCACGGAACTGATCGTCCCTCCATGAATGATCTGTTGTGGAATCTAGAATTTGCTCTCAACCTGCAAGAAAACAAGGATGGTTCAACTAACTCTGCAGCTCGAACCGATGAAAATGAGTTTGAAGAAATAAACCTAGGAGACAAAGAGATGGCAAACCATTATAAGAACCTGAGCCTTGGAAGTCAGCATGACCTTAGCCAAGATTCTGAATCCAGTGAGAGTCCGACTGAAATCTTCGCACAACTTGTTAGTTCAAAAGGACGATGA	2631	0.4352	MYIFSSNVHNKHTSILFFVVGISILLHGIHGAWIEEPGSLILGCGLDEGGAKDDDGRQWSPDNKFVAADAGSITSKAAYQDPSLTSVVPYMSARIFTSETTYKFNVQPDKRYWLRLHFYPSLYGSYNPYDSYFSVAANGITLLSNFSAYITCEALSQAYIDREYSLAPLNSDTLTLTFKPSDKQNGAFAFVNGIQLIPMPELFDSAAMVGYADQNVDVKTMSLQTMFRLNVGGQYVSPAQDSGLSRMWYDDTPYLYGASTGVTNQASKNVRITYPNMPQYIAPQTVYATSRSMGNDKNVNMGYNLTWVFQVDPNSMYLARLHFCDYYYSRVNEIVFNIFVNNQTAEAQADVIGWTGGKGMATYKDYVVYVQDGEGDEQLWLALHPTPETKPEYYDAILNGVEIFKINDTDLSGPNPQPSDMLLEDQAKETGFQTHKSYDKKAVIGGAAGGAAGVAFMAAICIAVYHKKKRVPGAGGATHTSWLPIYGNSHTNGSKSTSGKSIASANLAAMAQGLCRYFSLQEIKQATKNFDESNVIGVGGFGKVYKGEIDNGVLVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDDEMCLVYDYMALGTFREHLYKGTKPLNILTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWNAKVSDFGLSKTGPDLNAAGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVLNPSLPKEQVSLADWALLCNQKGTLEDIIDPNLKGTINPESLKKFVDTAEKCLSDHGTDRPSMNDLLWNLEFALNLQENKDGSTNSAARTDENEFEEINLGDKEMANHYKNLSLGSQHDLSQDSESSESPTEIFAQLVSSKGR	876

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g05069	876	ProSitePatterns	Protein kinases ATP-binding region signature.	536	558	IPR017441	GO:0005524
	Trre14g05069	876	Gene3D	Transferase(Phosphotransferase) domain 1	606	830	-	-
	Trre14g05069	876	Pfam	Malectin-like domain	43	406	IPR024788	-
	Trre14g05069	876	PANTHER	OS07G0166700 PROTEIN	514	810	IPR045272	GO:0004714\|GO:0006468
	Trre14g05069	876	MobiDBLite	consensus disorder prediction	846	876	-	-
	Trre14g05069	876	SMART	serkin_6	530	806	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g05069	876	SUPERFAMILY	Protein kinase-like (PK-like)	509	806	IPR011009	-
	Trre14g05069	876	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	652	664	IPR008271	GO:0004672\|GO:0006468
	Trre14g05069	876	CDD	STKc_IRAK	536	804	-	-
	Trre14g05069	876	Pfam	Protein tyrosine and serine/threonine kinase	534	800	IPR001245	GO:0004672\|GO:0006468
	Trre14g05069	876	FunFam	Receptor-like protein kinase FERONIA	606	821	-	-
	Trre14g05069	876	FunFam	FERONIA receptor-like kinase	221	407	-	-
	Trre14g05069	876	Gene3D	-	42	199	-	-
	Trre14g05069	876	Gene3D	-	221	407	-	-
	Trre14g05069	876	Gene3D	Phosphorylase Kinase; domain 1	490	605	-	-
	Trre14g05069	876	FunFam	receptor-like protein kinase FERONIA	492	605	-	-
	Trre14g05069	876	FunFam	FERONIA receptor-like kinase	39	200	-	-
	Trre14g05069	876	ProSiteProfiles	Protein kinase domain profile.	530	806	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g05069	Trre-Chr14	56964161	56966791	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g05069	40	876	Receptor kinase-like Gene Family	AT3G51550	52.813	0.0	842

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Trre14g05069		Malectin_like	9.3e-38	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g05069	-		-	tpra:123889663	1693.71