Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05067 ATGGCTCCCGATGCTTCCGATGCACTTGCAGTGAGACAGATAGTTCAAAACTTTCTCAACGCCGCTCGTACCGGAAATCTCGATCTCTTGAAGAAATCTGCGGAACAATTAGATGAGGGAAAAAATTTAGCCAAAACAGTTGAAGCAATTAAAGATGCAAACAAACGTGGTGCACTTCACTTTGCTGCTATCGAAGGACAAACAGAGATTTGTAACTATCTATTACAGGATTTGAAGCTTAATATTGATTCTAAAGATGATGATGGTGAAACTCCTCTCATTCATGCTGCACGCCAAGGACATACGGCTACCGCTAAGTATCTTATCGACCGTGGTGCTGATGCTACTATTGCCAGCAATTTAGGAGCTACCGCGTTGCATCATTCCACAGGGATAGGAGATACCGAGTTACTTGAGCATTTGCTGTCCAAAGGAATTAATCCCGACTTAGAAAGTGATGCGGGAACACCTTTGGTTTGGGCTGCTGGTCATGCTCAAGAAGCTGCTGTTACTGTTCTATTAAAACATGGTGCAAATCCCAATGCTGAAACTGATGATGGCATTACCCCACTCCTTTCTTCTGTGGCAGCTGGTTCTGTAGCATGCTTAGAGCTGTTAATACAGGCAGGTGCAAAAGTAAATGTTATTGCTGGTGGAGCGACTCCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTCTAAATTCCTTATTGAAAGCTGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGTAATCGTGCAGCTGTTGAGATATTGTTCCCGGCAACATCTAAAATTGATGGTATTCCTTCTTGGTCTGTTGATGGGATACTTGAGTATATTCAATCAGAAAGTAAAACGCAGCAGGATAAATTGGTAGATGCTAAAGAAAATAGTCGTCCTGAGGATGCTGTTTCCCGAGAGCAAAATATCCCCGAGGTGACACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAATCAAGAGGGGATGAGGCTTTTAAAAGGCAAGACTATCATATGGCAATAGATTCCTACACACAAGCAATTGATCTGAATCCCAGCGATGGTACGTTGCTATCAAATAGAAGTCTATGTTGGATTAAGCTGGGTCAAGCCGAGCATGCTTTAGCTGATGCAAAAGCCTGTAGAGCATTAAGACCAGATTGGTCCAAAGCTTGTTATAGAGAAGGTGCAGCGTTGCGTTTGTTGCAGAAGTTTGATGAAGCTGCAAATGCTTTTTACGAAGGTGTAATGCTTGACCCCGAGAGCAAGGAACTTGTAAATGCGTTCAGGGAAGCTGTTGAAGCTGGAAAGAAATTTCATGGCACAATTGAGAATAAATCATAG 1383 0.4309 MAPDASDALAVRQIVQNFLNAARTGNLDLLKKSAEQLDEGKNLAKTVEAIKDANKRGALHFAAIEGQTEICNYLLQDLKLNIDSKDDDGETPLIHAARQGHTATAKYLIDRGADATIASNLGATALHHSTGIGDTELLEHLLSKGINPDLESDAGTPLVWAAGHAQEAAVTVLLKHGANPNAETDDGITPLLSSVAAGSVACLELLIQAGAKVNVIAGGATPLHIAADNGSLELLNSLLKAGADPNVSDEDGVKPIQVAAGRGNRAAVEILFPATSKIDGIPSWSVDGILEYIQSESKTQQDKLVDAKENSRPEDAVSREQNIPEVTPEAKKRAAESKSRGDEAFKRQDYHMAIDSYTQAIDLNPSDGTLLSNRSLCWIKLGQAEHALADAKACRALRPDWSKACYREGAALRLLQKFDEAANAFYEGVMLDPESKELVNAFREAVEAGKKFHGTIENKS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05067 460 SMART ANK_2a 88 117 IPR002110 GO:0005515
Trre14g05067 460 SMART ANK_2a 121 150 IPR002110 GO:0005515
Trre14g05067 460 SMART ANK_2a 153 182 IPR002110 GO:0005515
Trre14g05067 460 SMART ANK_2a 54 84 IPR002110 GO:0005515
Trre14g05067 460 SMART ANK_2a 251 280 IPR002110 GO:0005515
Trre14g05067 460 SMART ANK_2a 186 215 IPR002110 GO:0005515
Trre14g05067 460 SMART ANK_2a 218 247 IPR002110 GO:0005515
Trre14g05067 460 Gene3D Tetratricopeptide repeat domain 332 447 IPR011990 GO:0005515
Trre14g05067 460 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Trre14g05067 460 Pfam Tetratricopeptide repeat 341 367 IPR019734 GO:0005515
Trre14g05067 460 Gene3D - 12 187 IPR036770 -
Trre14g05067 460 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Trre14g05067 460 MobiDBLite consensus disorder prediction 301 343 - -
Trre14g05067 460 SUPERFAMILY TPR-like 333 446 IPR011990 GO:0005515
Trre14g05067 460 Pfam Ankyrin repeats (3 copies) 21 117 IPR002110 GO:0005515
Trre14g05067 460 Pfam Ankyrin repeats (3 copies) 185 249 IPR002110 GO:0005515
Trre14g05067 460 Pfam Ankyrin repeats (3 copies) 122 182 IPR002110 GO:0005515
Trre14g05067 460 ProSiteProfiles Ankyrin repeat region circular profile. 88 120 - -
Trre14g05067 460 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Trre14g05067 460 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Trre14g05067 460 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Trre14g05067 460 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 452 - -
Trre14g05067 460 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Trre14g05067 460 MobiDBLite consensus disorder prediction 300 343 - -
Trre14g05067 460 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Trre14g05067 460 SUPERFAMILY Ankyrin repeat 19 273 IPR036770 -
Trre14g05067 460 Gene3D - 188 277 IPR036770 -
Trre14g05067 460 ProSiteProfiles Ankyrin repeat region circular profile. 186 215 - -
Trre14g05067 460 PRINTS Ankyrin repeat signature 169 183 IPR002110 GO:0005515
Trre14g05067 460 PRINTS Ankyrin repeat signature 89 104 IPR002110 GO:0005515
Trre14g05067 460 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Trre14g05067 460 SMART tpr_5 402 435 IPR019734 GO:0005515
Trre14g05067 460 SMART tpr_5 368 401 IPR019734 GO:0005515
Trre14g05067 460 SMART tpr_5 334 367 IPR019734 GO:0005515
Trre14g05067 460 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05067 Trre-Chr14 56952896 56958453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05067 70 305 Ion Channels AT2G25600 28.674 1.17e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05067 - - gmx:100798118 763.066