Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05060 ATGGGAGGAGAAGGGAGGGGAGGAGATACAGAGTTACTTGAGCATTTGCTTTCCAAAGGAATTAATCCCGACTTAGAAAGTGATGCGGGAACACCTTTGGTTTGGGCTGCTGGTCATGCTCAAGAAGCTGCTGTTACTGTTCTATTGAAACATGGTGCAAATCCCAATGCTGAAACTGATGATGGCATTACCCCACTCCTTTCTTCTGTGGCAGCTGGTTCTGTAGCATGCTTAGAGCTGTTAATACAGGCAGGTGCAAAAGTAAATGTTATTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTCTAAATTCCTTATTGAAAGCTGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGTAATCGTGCAGCTGTTGAGATATTGTTCCCGGCAACATCTAAAATTGATGGTATTCCTTCTTGGTCTGTTGATGGGATACTTGAGTATATTCAATCAGAAAGTAAAACGCAGCAGGATAAATTGGTAGATGCTAAAGAAAATAGCCGTCCTGAGGATTCTGTTTCCCGAGAGCAAAATATCCCCGAGGTGACACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAATCAAGAGGGGATGAGGCTTTTAAAAGGCAAGACTATCATATGGCAATAGATTCCTACACACAAGCAATTGATCTGAATCCCAGCGATGGTACGTTGCTATCAAATAGAAGTCTATGTTGGATTAAGCTGGGTCAAGCCGAGCATGCTTTAGCTGATGCAAAAGCCTGTAGAGCATTAAGACCAGATTGGTCCAAAGCTTGTTATAGAGAAGGTGCAGCGTTGCGTTTGTTGCAGAAGTTTGATGAAGCTGCAAATGCTTTTTACGAAGGTGTAATGCTTGACCCCGAGAACAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTTGAAGCTGGAAAGAAATTTCATGGCACAATTGAGAATAAATCATAG 1008 0.4335 MGGEGRGGDTELLEHLLSKGINPDLESDAGTPLVWAAGHAQEAAVTVLLKHGANPNAETDDGITPLLSSVAAGSVACLELLIQAGAKVNVIAGGATPLHIAADNGSLELLNSLLKAGADPNVSDEDGVKPIQVAAGRGNRAAVEILFPATSKIDGIPSWSVDGILEYIQSESKTQQDKLVDAKENSRPEDSVSREQNIPEVTPEAKKRAAESKSRGDEAFKRQDYHMAIDSYTQAIDLNPSDGTLLSNRSLCWIKLGQAEHALADAKACRALRPDWSKACYREGAALRLLQKFDEAANAFYEGVMLDPENKELVNAFREAVEAGKKFHGTIENKS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05060 335 Gene3D Tetratricopeptide repeat domain 207 322 IPR011990 GO:0005515
Trre14g05060 335 SMART tpr_5 277 310 IPR019734 GO:0005515
Trre14g05060 335 SMART tpr_5 243 276 IPR019734 GO:0005515
Trre14g05060 335 SMART tpr_5 209 242 IPR019734 GO:0005515
Trre14g05060 335 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Trre14g05060 335 SMART ANK_2a 61 90 IPR002110 GO:0005515
Trre14g05060 335 SMART ANK_2a 126 155 IPR002110 GO:0005515
Trre14g05060 335 SMART ANK_2a 28 57 IPR002110 GO:0005515
Trre14g05060 335 SMART ANK_2a 93 122 IPR002110 GO:0005515
Trre14g05060 335 MobiDBLite consensus disorder prediction 176 218 - -
Trre14g05060 335 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Trre14g05060 335 ProSiteProfiles Ankyrin repeat region circular profile. 61 90 - -
Trre14g05060 335 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 327 - -
Trre14g05060 335 ProSiteProfiles TPR repeat profile. 277 310 IPR019734 GO:0005515
Trre14g05060 335 MobiDBLite consensus disorder prediction 175 218 - -
Trre14g05060 335 SUPERFAMILY TPR-like 208 321 IPR011990 GO:0005515
Trre14g05060 335 ProSiteProfiles Ankyrin repeat profile. 93 125 IPR002110 GO:0005515
Trre14g05060 335 Pfam Tetratricopeptide repeat 216 242 IPR019734 GO:0005515
Trre14g05060 335 Pfam Ankyrin repeats (3 copies) 45 124 IPR002110 GO:0005515
Trre14g05060 335 ProSiteProfiles Ankyrin repeat region circular profile. 93 125 - -
Trre14g05060 335 Gene3D - 6 180 IPR036770 -
Trre14g05060 335 ProSiteProfiles TPR repeat profile. 209 242 IPR019734 GO:0005515
Trre14g05060 335 SUPERFAMILY Ankyrin repeat 8 153 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05060 Trre-Chr14 56911594 56916368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05060 8 180 Ion Channels AT2G25600 30.233 2.42e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05060 - - gmx:100798118 553.518