Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05059 ATGAAAAAGAGTCATCATATAAGAGATACAGAGTTACTTGAGCATTTGCTTTCCAAAGGAATTAATCCCGACTTAGAAAGTGATGCGGGAACACCTTTGGTTTGGGCTGCTGGTCATGCTCAAGAAGCTGCTGTTACTGTTCTATTGAAACATGGTGCAAATCCCAATGCTGAAACTGATGATGGCATTACCCCACTCCTTTCTTCTGTGGCAGCTGGTTCTGTAGCATGCTTAGAGCTGTTAATACAGGCAGGTGCAAAAGTAAATGTTATTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTCTAAATTCCTTATTGAAAGCTGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGTAATCGTGCAGCTGTTGAGATATTGTTCCCGGCAACATCTAAAATTGATGGTATTCCTTCTTGGTCTGTTGATGGGATACTTGAGTATATTCAATCAGAAAGTAAAACGCAGCAGGATAAATTGGTAGATGCTAAAGAAAATAGCCGTCCTGAGGATTCTGTTTCCCGAGAGCAAAATATCCCCGAGGTGACACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAATCAAGAGGGGATGAGGCTTTTAAAAGGCAAGACTATCATATGGCAATAGATTCCTACACACAAGCAATTGATCTGAATCCCAGCGATGGTACGTTGCTATCAAATAGAAGTCTATGTTGGATTAAGCTGGGTCAAGCCGAGCATGCTTTAGCTGATGCAAAAGCCTGTAGAGCATTAAGACCAGATTGGTCCAAAGCTTGTTATAGAGAAGGTGCAGCGTTGCGTTTGTTGCAGAAGTTTGATGAAGCTGCAAATGCTTTTTACGAAGGTGTAATGCTTGACCCCGAGAACAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTTGAAGCTGGAAAGAAATTTCATGGCACAATTGAGAATAAATCATAG 1008 0.4246 MKKSHHIRDTELLEHLLSKGINPDLESDAGTPLVWAAGHAQEAAVTVLLKHGANPNAETDDGITPLLSSVAAGSVACLELLIQAGAKVNVIAGGATPLHIAADNGSLELLNSLLKAGADPNVSDEDGVKPIQVAAGRGNRAAVEILFPATSKIDGIPSWSVDGILEYIQSESKTQQDKLVDAKENSRPEDSVSREQNIPEVTPEAKKRAAESKSRGDEAFKRQDYHMAIDSYTQAIDLNPSDGTLLSNRSLCWIKLGQAEHALADAKACRALRPDWSKACYREGAALRLLQKFDEAANAFYEGVMLDPENKELVNAFREAVEAGKKFHGTIENKS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05059 335 Gene3D Tetratricopeptide repeat domain 207 322 IPR011990 GO:0005515
Trre14g05059 335 SMART tpr_5 277 310 IPR019734 GO:0005515
Trre14g05059 335 SMART tpr_5 243 276 IPR019734 GO:0005515
Trre14g05059 335 SMART tpr_5 209 242 IPR019734 GO:0005515
Trre14g05059 335 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Trre14g05059 335 SMART ANK_2a 61 90 IPR002110 GO:0005515
Trre14g05059 335 SMART ANK_2a 126 155 IPR002110 GO:0005515
Trre14g05059 335 SMART ANK_2a 28 57 IPR002110 GO:0005515
Trre14g05059 335 SMART ANK_2a 93 122 IPR002110 GO:0005515
Trre14g05059 335 MobiDBLite consensus disorder prediction 176 218 - -
Trre14g05059 335 SUPERFAMILY Ankyrin repeat 9 153 IPR036770 -
Trre14g05059 335 Pfam Ankyrin repeats (3 copies) 10 90 IPR002110 GO:0005515
Trre14g05059 335 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Trre14g05059 335 ProSiteProfiles Ankyrin repeat region circular profile. 61 90 - -
Trre14g05059 335 ProSiteProfiles TPR repeat profile. 277 310 IPR019734 GO:0005515
Trre14g05059 335 MobiDBLite consensus disorder prediction 175 218 - -
Trre14g05059 335 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 9 327 - -
Trre14g05059 335 SUPERFAMILY TPR-like 208 321 IPR011990 GO:0005515
Trre14g05059 335 ProSiteProfiles Ankyrin repeat profile. 93 125 IPR002110 GO:0005515
Trre14g05059 335 Pfam Tetratricopeptide repeat 216 242 IPR019734 GO:0005515
Trre14g05059 335 Pfam Ankyrin repeats (many copies) 96 146 IPR002110 GO:0005515
Trre14g05059 335 ProSiteProfiles Ankyrin repeat region circular profile. 93 125 - -
Trre14g05059 335 ProSiteProfiles TPR repeat profile. 209 242 IPR019734 GO:0005515
Trre14g05059 335 Gene3D - 5 180 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05059 Trre-Chr14 56911594 56919178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05059 9 180 Ion Channels AT2G25600 29.907 1.17e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05059 - - gmx:100798118 552.747