Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05057 ATGGTTGTTAAAGTAAAGAGAGAAAATCTTGAAGCATGCATGACATGTCCTCTTTGTCAAAAGCTTCTCAAAGATGCTACCACCATTTCTCTATGTCTTCACACTTTTTGCAGGAAGTGTATATATGAGAAGCTTTCAGATGAAGAGGTGGATTGTTGTCCGGTATGCGAAATTGATCTGGGCATCCTTCCGGTCGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCTTTTAAACATAAAAAGGTTCAAGCCGAAGAAGTTGTTCCCTCAACACCCCTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATACTAGCTTTACAGGAAAGAGAACAAAAAGTGGTACAAGAAAGGCTGCTGCTTTACGTGGCTGCAGTTTTACTGAAGAATCCATAAAGAAAGAAGAAGCACACGATGAAGATAATCTGAATTCTTCTATAGGTGAGACTTCTAAGAAGCATAGATCCAATGAAGATTCAGACAACAATATTGACCTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCGGCCAATAGAACAAAGCCCTCCAGGTCAAATTTACAAGGGACTGCCAAATTAGAGTCTCCAATTACTCCTCATGGTGGACTAGTGATGTCAGAAACTACAACTAAATCGGATCCACCTACATCTGTCCAGAGTGAATTACATGTGCCTAAAACCAAAAACAAGAGTAATGGACATAAAAGAAAGTTTGGAGATGACAAGGACGGAAACACCTTGCCTTCAGGACCAGTGAAGCGAAAACGGCCGCGTCCTTCGAATCAGAAGAGAGCAGCAGCATCTGAGATGTCTGCTTCAGCCCAACTCATGTTAGATGCAACAGGGAGCAGGTGCAACAGGAAAAACAGTCCTATTTGGTTTACATTAGTTGCTTCGGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATTAAGGATGGTACTGTACCCGTCTCATTTATTCAAAAGTACCTCATGAAGAAACTTAATCTTGCTAGCGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTACCATCTTTGCAAATGCATAACTTAGTAGATCTGTGGTTCTGCACATCATCAACATCAAAAAAGCTACCGGCATCTGTGGGATCTTCGGCTAAGGACTTTGTGATGGCTTTATCGTATTGTCGAAAGACCTTACCTCATTGA 1278 0.4233 MVVKVKRENLEACMTCPLCQKLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCEIDLGILPVEKLRPDHNLQDIRTKIFPFKHKKVQAEEVVPSTPLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKSGTRKAAALRGCSFTEESIKKEEAHDEDNLNSSIGETSKKHRSNEDSDNNIDLTEGKADLWTPLNCLVEAANRTKPSRSNLQGTAKLESPITPHGGLVMSETTTKSDPPTSVQSELHVPKTKNKSNGHKRKFGDDKDGNTLPSGPVKRKRPRPSNQKRAAASEMSASAQLMLDATGSRCNRKNSPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPVSFIQKYLMKKLNLASEAEVEIMCRGQPVLPSLQMHNLVDLWFCTSSTSKKLPASVGSSAKDFVMALSYCRKTLPH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05057 425 SUPERFAMILY RING/U-box 10 80 - -
Trre14g05057 425 MobiDBLite consensus disorder prediction 227 251 - -
Trre14g05057 425 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Trre14g05057 425 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Trre14g05057 425 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Trre14g05057 425 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 423 IPR044807 GO:0004842
Trre14g05057 425 MobiDBLite consensus disorder prediction 259 274 - -
Trre14g05057 425 MobiDBLite consensus disorder prediction 149 185 - -
Trre14g05057 425 MobiDBLite consensus disorder prediction 204 296 - -
Trre14g05057 425 MobiDBLite consensus disorder prediction 204 218 - -
Trre14g05057 425 CDD RING-HC_PCGF 14 57 - -
Trre14g05057 425 Gene3D - 295 402 - -
Trre14g05057 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
Trre14g05057 425 MobiDBLite consensus disorder prediction 149 184 - -
Trre14g05057 425 SMART ring_2 16 56 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05057 Trre-Chr14 56899727 56906550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05057 1 344 C3H Transcription Factor Family AT2G30580 44.357 2.27e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05057 K16277 - gmx:100783999 661.759