LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g05050	ATGGAGCTACCTTCGAACTTATTGTCTGATGAGGCAAGCCCAGAGTGGATGAACAAAGGAGACAACGCATGGCAATTAACAGCAGCAACAATGGTTGGGCTTCAAAGCATTCCCGGGCTTGTAATCCTATACGGAAGCCTGGTTAAGAAAACATGGGCCATAAACTCTGCTTTCATGGCTTTTTACGCTTTTGCAGCAGTTCTCCTATGTTGGGTTTCATGGGCTTATCACATGTCATTTGGGGACAAAATGGTATTTTTCTTAGGGAAACCAGGAGTAGCATTGGATGAAAAGTTTTTATTAGGAAAAGCATTTTTGGGAAATTTTCCTAATGCTACAATGGTATTTTATCAAGGTGTATTTGCTGGTATTACTTTGATTTTGATAGCTGGTGCTTTACTTGGGAGAATGAATATTCGTGCATGGATGTTATTTGTGCCACTTTGGGTAACATTCTCGTACACTGTTGTTGCTTTTAGTATTTGGTGTCCTGATGGATGGTTGGCTAAACGTGGTGTTATTGATTTTGCTGGTGGTTATGTTATTCACCTCTCTGCTGGAGTTGCTGGTTTCACTGCAGCTTATTGGGTTGGTCCTCGAGCAGAGAAGGACAGGGAAACATTTCCGGCAGCAGCAAACAACATGATAATGGTGCTTGCAGGCGCAGGCCTGCTTTGGATGGGTTGGAGTGGATTCAACGGTGGAGGTCCATTTGTTGCTAGTACCATTGCATCTCTTGCTGTCCTAAACACACACGTGTGTACTGCTGCTAGCATCATCGTATGGATCACACTTGATACCTTCTACTTCGGCAAGCCCACCGTGTTTGGTGCCGTACAAGGCATGATCACCGGTCTCGTTTGTATCACACCCGCCGCAGGAGTTGTGCAGGGGTGGGCAGCAATCTTAATGGGTTTGATCTCAGGAAGTATTCCATGGTACACAATGATGGTACTCCACAACAAGGTTAATTTCTTAATGAAAATTGACGATCCCATGGCGGTGTTCCACACCCACGCAATAGCCGGTGCTCTTGGCGGCATTCTCACCGGCTTCTTTGCCGTGCCAAAATTATGTCGTCTCTTCTACATGGTGCCTGATTGGGAAAAATACATCGGCCTCGCCTATGGCCTACAAAATAGTGGTGCAACTCGAGCGGGTTTGAAACAAATGTTGATCCAAGTTGAGGCCATAGTTTTTGTGATTTGCTACAATGTTGTTGTGACTAGTTTGATTTGCTTGCTTGTGAGAGTCATGGTACCACTTAGGCTTGATAGTGATGCATTGCAAATGGGTGATAGGGCAATTCATGGAGAGGATGCTTTTGCCTTGCATAGTGAGACAACTAAATTTGTGAACATTAAGCGCAATCAGATTTATGATACACAAGATTTCTCGTCCAATTACAAGTCTAGGTCATTAGGTGAGCTTCAAATGGTATAA	1443	0.4414	MELPSNLLSDEASPEWMNKGDNAWQLTAATMVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVSWAYHMSFGDKMVFFLGKPGVALDEKFLLGKAFLGNFPNATMVFYQGVFAGITLILIAGALLGRMNIRAWMLFVPLWVTFSYTVVAFSIWCPDGWLAKRGVIDFAGGYVIHLSAGVAGFTAAYWVGPRAEKDRETFPAAANNMIMVLAGAGLLWMGWSGFNGGGPFVASTIASLAVLNTHVCTAASIIVWITLDTFYFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSIPWYTMMVLHNKVNFLMKIDDPMAVFHTHAIAGALGGILTGFFAVPKLCRLFYMVPDWEKYIGLAYGLQNSGATRAGLKQMLIQVEAIVFVICYNVVVTSLICLLVRVMVPLRLDSDALQMGDRAIHGEDAFALHSETTKFVNIKRNQIYDTQDFSSNYKSRSLGELQMV	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g05050	480	PRINTS	Rhesus blood group protein signature	118	134	IPR002229	GO:0005886
	Trre14g05050	480	PRINTS	Rhesus blood group protein signature	216	234	IPR002229	GO:0005886
	Trre14g05050	480	PRINTS	Rhesus blood group protein signature	247	269	IPR002229	GO:0005886
	Trre14g05050	480	PRINTS	Rhesus blood group protein signature	302	320	IPR002229	GO:0005886
	Trre14g05050	480	Pfam	Ammonium Transporter Family	23	441	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Trre14g05050	480	SUPERFAMILY	Ammonium transporter	16	424	-	-
	Trre14g05050	480	ProSitePatterns	Ammonium transporters signature.	175	200	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Trre14g05050	480	PANTHER	AMMONIUM TRANSPORTER MEP2	5	450	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Trre14g05050	480	Gene3D	Ammonium transporter AmtB like domains	5	460	IPR029020	-
	Trre14g05050	480	NCBIfam	ammonium transporter	21	441	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Trre14g05050	480	FunFam	Ammonium transporter	5	445	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g05050	Trre-Chr14	56851416	56854365	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g05050	112	468	Inorganic Solute Cotransporters	AT2G38290	53.501	2.26e-124	365

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g05050	K03320		-	gmx:100782944	802.742