Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05002 ATGAACCTATTTGTTGCATTGCTATGTGCTTGTATAGTCATTGGCCATCTTCTTGAGGAGAATCGATGGATTAACGAGTCTATCACTGCCCTTTTAATAGGTCTATGTACTGGTGTGGTGATTTTGTGGATAAGCAATGGTAAAAACTCGCATCTACTTGTTTTTAGTGAAGATCTATTTTTTATATATCTTCTACCTCCCATCATCTTTAATGCCGGGTTTCAGGTGAAAAAGAAACGGTTTTTCGTTAATTTCATCACCATCATGATGTTTGGTGCCATTGGTACATTAATAAGCTGTAGCATCATATCTTTTGGTGTGACACAAATTTTTAAGAGATTGGGTCTTGGTACCCTGGAGCTAGGGGAGGCTCTAGCAATTGGTGCAATATTTGCTGCAACAGATTCTGTGTGCACGTTGCAGGTGTTAAACCAGGATGAGACACCTTTACTATACAGCCTTGTATTTGGTGAAGGTGTTGTGAATGATGCTACTTCAGTGGTTCTTTTCAATGCAATCAAAAGTTTTGATCTTGAACAACCTGGCCATGGAATTGCTTTGCAATTTTTTGGCAACTTCTTGTATTTGTTTATAGCAAGCACCATGCTTGGATTTTTGGGTGGTCTACTTAGTGCATACATTATCAAAAAGCTCTATTTTGGAAGGCACTCGACTGATCGTGAGGTTGCTCTGATGATGCTAATGGCATACCTTACCTACATTTTGGCTGAATTATGGTTTCTTAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTAATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACTACCAAACATTCTTTTGCAACCCTGTCATTTGTTGCTGAGACATTTCTCTTCCTTTATGTTGGTATGGATGCATTGGACATTGAAAAATGGAGATTTGTTAGTGATAGACCTGGAACATCTGTCAGTGTGAGTTCAGTATTATTAGCTCTAGTACTCATTGGAAGAGCAGCATTTGTTTTCCCCTTATCCTTCTTAATCAACTTGACTAAAAAGTCAGAAAATGATAAACTAAGCTTCAGCATGCAGGTGATCATTTGGTGGGCAGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTATAATGAGTTTTCTAGTGTATCTGGGCATGGGCATGCTCAATTGCGATTCAATGCTACCATGATCACAAGTACCATCACTGTTGTGCTTGTTAGTACAATGGTGTTTGGTATGATGACAAAGCCATTAATAAGATATTTACTACCTCTTCCTCCTCCAAAACGGAAAAACAGCACTGTGAGTCTTGATGAATCTGCTTCACCTTCACCAAAATCAATCACTGTGCCATTCCTTGGAGCTAACCATGATTCTGAAGTTGAAACTGATGCCACTGATTCTCAACGTCCGAGCAGCATTCGTGATTTACTCACCACTCCAACACACACTGTCCATCGGTTATGGCGTAGGTTTGATGATGCATTTATGCGTCCGGTTTTTGGTGGTAGGGGTTTTGTTCCTTTTGTTCCTACCTCGCCAACCGAGTGCAGCGGTCATCCAAGTCCCGAATGGGAATGA 1584 0.404 MNLFVALLCACIVIGHLLEENRWINESITALLIGLCTGVVILWISNGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFITIMMFGAIGTLISCSIISFGVTQIFKRLGLGTLELGEALAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLEQPGHGIALQFFGNFLYLFIASTMLGFLGGLLSAYIIKKLYFGRHSTDREVALMMLMAYLTYILAELWFLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAETFLFLYVGMDALDIEKWRFVSDRPGTSVSVSSVLLALVLIGRAAFVFPLSFLINLTKKSENDKLSFSMQVIIWWAGLMRGAVSMALAYNEFSSVSGHGHAQLRFNATMITSTITVVLVSTMVFGMMTKPLIRYLLPLPPPKRKNSTVSLDESASPSPKSITVPFLGANHDSEVETDATDSQRPSSIRDLLTTPTHTVHRLWRRFDDAFMRPVFGGRGFVPFVPTSPTECSGHPSPEWE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05002 527 Pfam Sodium/hydrogen exchanger family 5 420 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre14g05002 527 MobiDBLite consensus disorder prediction 434 450 - -
Trre14g05002 527 Gene3D - 120 172 - -
Trre14g05002 527 PRINTS Na+/H+ exchanger signature 88 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre14g05002 527 PRINTS Na+/H+ exchanger signature 73 87 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre14g05002 527 PRINTS Na+/H+ exchanger signature 128 138 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre14g05002 527 PRINTS Na+/H+ exchanger signature 59 70 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre14g05002 527 MobiDBLite consensus disorder prediction 433 453 - -
Trre14g05002 527 PANTHER SODIUM/HYDROGEN EXCHANGER 3 502 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05002 Trre-Chr14 56522293 56527152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05002 1 521 Antiporters AT3G05030 75.526 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05002 - - tpra:123890854 957.592