Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04981 ATGGCCAATCACGATCACCACCACCACAAAGATTATTGTATATGGAACCCTAAAACTAGCCCTGCTAACAGATTAAACAAGATCTCAATGGAAGATGCTTTTTTTAATCATAAACACAAATCTACTTCTGCTCAAGGATGTTCAAGCTTAAGTGCAAAAAAAATTCAATGGGAAAAGGCTTTTAAGATATGGAAGAAAAAATCAATTAATCACACATCCTCCCTCCCTTCTTTTTGTGTGCCGATATCAAACTCGACAAAGTCTAAAAGCTTAAGCTTCAGAGAAAATCCTATTCTATCTGATTTATACAACTTCAGATCTTCTTTGGTCAATTTCACCCTCTCAGACCTCAGAATTGCAACCAACAATTTTAGCAAAGAAAATTTAATTGGGAGAGGGGGATTCGCGGAGGTTTACAAGGGCTGCCTTCAAGATGGACAGCTGATAGCTGTTAAGCGGATGAATAAAGGGACTTTGGATGAGAGAACGTCAAACTTTTTATCTGAGCTTGGCATTATTGCTCATCTAAACCATCCTAACACTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGAAATGCACCTTGTCTTTCAACTATCTCCATTGGGAAGTTTGGATACTCTTCTTCATGGTTTTAATAAAAACAGATTAGATTGGAGTAAAAGGTATAAAATTATAGTGGGGATAGCTGATGGACTCCTATATCTACATGAGAATTGTCGAAGACGTATCATTCATAGAGATATTAAAGCAGGGAATATTCTGCTGACAGAGAATTTTGAGCCTCAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATGTAGTCACCATAATGTACAGAAATCTGAAGGCACATTCGGGTATTTTGCACCTGAATATTTGCTGCATGGCATAGTAGACGAGAAAACTGATGTTTACTCCTTCGGTGTCCTGCTTTTGGAGATTATAACTGGGCGTAGAGCTTTGGATCATTTGCATCAAAGTCTTGTGTTATGGGCAAAGCCTTTGCTTGATGCTAATAACATCAAGGACCTTGTTGATCCTTCTCTTGGAGGTGATTATGACCAACAACAAATGGATTGTATTGTTTTGACTGCGTCTCTTTGTGTTGAGAACTCTCCTATCTTACGCCCCCGTTTCAATACTGCTAAGAGGAGATGA 1170 0.3872 MANHDHHHHKDYCIWNPKTSPANRLNKISMEDAFFNHKHKSTSAQGCSSLSAKKIQWEKAFKIWKKKSINHTSSLPSFCVPISNSTKSKSLSFRENPILSDLYNFRSSLVNFTLSDLRIATNNFSKENLIGRGGFAEVYKGCLQDGQLIAVKRMNKGTLDERTSNFLSELGIIAHLNHPNTAKLIGCGVEGEMHLVFQLSPLGSLDTLLHGFNKNRLDWSKRYKIIVGIADGLLYLHENCRRRIIHRDIKAGNILLTENFEPQICDFGLAKWLPEQCSHHNVQKSEGTFGYFAPEYLLHGIVDEKTDVYSFGVLLLEIITGRRALDHLHQSLVLWAKPLLDANNIKDLVDPSLGGDYDQQQMDCIVLTASLCVENSPILRPRFNTAKRR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04981 389 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 100 199 - -
Trre14g04981 389 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 201 388 - -
Trre14g04981 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Trre14g04981 389 Gene3D Transferase(Phosphotransferase) domain 1 201 389 - -
Trre14g04981 389 Gene3D Phosphorylase Kinase; domain 1 84 198 - -
Trre14g04981 389 ProSitePatterns Protein kinases ATP-binding region signature. 130 152 IPR017441 GO:0005524
Trre14g04981 389 PANTHER OS08G0249100 PROTEIN 37 384 IPR046958 -
Trre14g04981 389 SUPERFAMILY Protein kinase-like (PK-like) 104 387 IPR011009 -
Trre14g04981 389 ProSiteProfiles Protein kinase domain profile. 124 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g04981 389 Pfam Protein tyrosine and serine/threonine kinase 127 333 IPR001245 GO:0004672|GO:0006468
Trre14g04981 389 SMART serkin_6 124 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04981 Trre-Chr14 56418174 56421536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04981 101 381 Receptor kinase-like Gene Family AT1G53420 43.793 3.66e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre14g04981 PK_Tyr_Ser-Thr 5.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04981 - - cam:101512181 514.612