Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04958 ATGGCACTAGAACCAACTCTACTATATCTACATCAACAACAAGACCCTTTTAGCTACGGTTTCAACAAAGACCTCTACAACTACAACTTGTTAACAGATTTTGAAGCTTGTAACTTCAACCTTCAAAATGATCAACAACAACAAGGTTCTTCTGTTTCAAGTTTTCTCAATAACCAAACAGAGAATTACCCTTTTGAAACTAACAACGGTTCATCATCACAACAACAACCACCATTATTGTTGCCACAAATGGATGAAGTAGAAGCACTTCATATAACAAATCCATGTTTAGAAGATAGCTCAATTTCGACTCGTTCTCGTCCTAAGAAACGCAGAGTCAAAACAAGTAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTCGAACGTAATAGAAGAAAACAAATGAATGAGTATCTTTCTGTTCTTCGTTCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATAAACTTTGTTAAGAAGCTAGAGCAGAGATTACAATTTCTTGGTGTTCAGAAACAAAAAGAGGAAAAAATTGATACTATTGTTGAAATTAAAAACAAGCCCTTTTCTGAATTTTTCACTTTTCCACAATACTCAACAAATGCTATAGTGTGTGAAAATTCTGAGGCAAATAATGGTGAGATTGAGAAAATGGGTGAAGTTCAAGCTAGCAATATTGCTGATGTTGAAGTAACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAGAGACCAAAACAGCTCTTGAAGATAGTTTCTAGTTTGCATGGAATGTGTTTAACAATCTTGCACCTTAATGTCACTACAACTGATGAATTTGTCTTCTATTCTCTCAGTGTTAAGGTGGAAGATAATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGTTGGAAAGGATTCACCAAGAGTCATTATCAATATTAAATTAA 996 0.3544 MALEPTLLYLHQQQDPFSYGFNKDLYNYNLLTDFEACNFNLQNDQQQQGSSVSSFLNNQTENYPFETNNGSSSQQQPPLLLPQMDEVEALHITNPCLEDSSISTRSRPKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQRLQFLGVQKQKEEKIDTIVEIKNKPFSEFFTFPQYSTNAIVCENSEANNGEIEKMGEVQASNIADVEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMCLTILHLNVTTTDEFVFYSLSVKVEDNCKLGSVDEIAAAVYQMLERIHQESLSILN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04958 331 Gene3D - 114 193 IPR036638 GO:0046983
Trre14g04958 331 SMART finulus 130 181 IPR011598 GO:0046983
Trre14g04958 331 Coils Coil 172 192 - -
Trre14g04958 331 PANTHER MAX DIMERIZATION, MAD 47 325 - -
Trre14g04958 331 MobiDBLite consensus disorder prediction 98 120 - -
Trre14g04958 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 186 IPR036638 GO:0046983
Trre14g04958 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
Trre14g04958 331 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04958 Trre-Chr14 56286929 56288418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04958 1 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 43.692 1.46e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g04958 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04958 - - gmx:100782243 373.244