Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04957 ATGTGTTTACCAGAGGAAGAAAGAGAAAGAGCCATGGCACTAGAACCAACTCTACTATATCTACATCAACAACAAGACCCTTTTAGCTACGGTTTCAACAAAGACCTCTACAACTACAACTTGTTAACAGATTTTGAAGCTTGTAACTTCAACCTTCAAAATGATCAACAACAACAAGGTTCTTCTGTTTCAAGTTTTCTCAATAACCAAACAGAGAATTACCCTTTTGAAACTAACAACGGTTCATCATCACAACAACAACCACCATTATTGTTGCCACAAATGGATGAAGTAGAAGCACTTCATATAACAAATCCATGTTTAGAAGATAGCTCAATTTCGACTCGTTCTCGTCCTAAGAAACGCAGAGTCAAAACAAGTAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTCGAACGTAATAGAAGAAAACAAATGAATGAGTATCTTTCTGTTCTTCGTTCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATAAACTTTGTTAAGAAGCTAGAGCAGAGATTACAATTTCTTGGTGTTCAGAAACAAAAAGAGGAAAAAATTGATACTATTGTTGAAATTAAAAACAAGCCCTTTTCTGAATTTTTCACTTTTCCACAATACTCAACAAATGCTATAGTGTGTGAAAATTCTGAGGCAAATAATGGTGAGATTGAGAAAATGGGTGAAGTTCAAGCTAGCAATATTGCTGATGTTGAAGTAACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAGAGACCAAAACAGCTCTTGAAGATAGTTTCTAGTTTGCATGGAATGTGTTTAACAATCTTGCACCTTAATGTCACTACAACTGATGAATTTGTCTTCTATTCTCTCAGTGTTAAGGTGGAAGATAATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGTTGGAAAGGATTCACCAAGAGTCATTATCAATATTAAATTAA 1029 0.3567 MCLPEEERERAMALEPTLLYLHQQQDPFSYGFNKDLYNYNLLTDFEACNFNLQNDQQQQGSSVSSFLNNQTENYPFETNNGSSSQQQPPLLLPQMDEVEALHITNPCLEDSSISTRSRPKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQRLQFLGVQKQKEEKIDTIVEIKNKPFSEFFTFPQYSTNAIVCENSEANNGEIEKMGEVQASNIADVEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMCLTILHLNVTTTDEFVFYSLSVKVEDNCKLGSVDEIAAAVYQMLERIHQESLSILN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04957 342 PANTHER MAX DIMERIZATION, MAD 57 336 - -
Trre14g04957 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 197 IPR036638 GO:0046983
Trre14g04957 342 Gene3D - 125 204 IPR036638 GO:0046983
Trre14g04957 342 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983
Trre14g04957 342 Coils Coil 183 203 - -
Trre14g04957 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983
Trre14g04957 342 SMART finulus 141 192 IPR011598 GO:0046983
Trre14g04957 342 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04957 Trre-Chr14 56286896 56288418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04957 12 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 43.692 2.09e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g04957 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04957 - - gmx:100782243 382.874