LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g04955	ATGAAAAACAACCAGTTATTCATCTTCTTCATACTGCCGGGAATACTCCTTCTCTCCGCCACAAAAGCCCAAGCCCAAGCCCGAAACAACCAGAACGACACCAACAACGGCTTCACCCCAGGTCAAAATTTCGATCAATTCAACCCTTCCTTCGCTTTAATAATAGTTATTTTAGTAGCTGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGTCGCTGCTCCGATACACCTTCCTCCAACCTCGTTCTCCCTATCACCAACGCTCGTAGAGCAGCGCGTGGACTCGATGCATCAGTAATCGATACTTTCCCGATTCTAGAATACTCCGAAGTCAAGATCCATAAGATCGGAAAAGAGGTTCTGGAGTGTGCCGTTTGTTTAATGGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCAAAGTGTGATCATGTTTTTCACCCTGAGTGCATCGATGAGTGGTTATCTTCACACACAACGTGTCCCGTTTGTCGTGCTAATCTTGTTCCACAACCTGGTGACTCAGTTCACGGTGTTCCTGAGTCAAACAACGAGTCACAAACACAAGACGTTGAAGCTCAAAACGACGCCGTTCAAACACCGACGGAAGAAGTAACTAACAACGAATCTGACCCGGTCTTACTTGCTCCTGAAGTGATTTCGTTGGATAAAACGCTGAACCGGAACCGTACGCGTGGATCTCAATCGAACCGGACGCGTCGTTTTCCACGGTCACACTCGACCGGACATTCATTAATCCAACCGGGTGAAAACACGGACCGGTTCACTTTGAAACTGCCGTTTAAAGTAAGAAAACAGATAATGAACCGGCAGTTACAACGGGCGAGTAGTTTAATTACTTTACCTGGAGAAAGTAGTTTGAGACAGGGTTACCGAACCGGAGGTGAAGGAAGTAGTAGAGGAAAAAGTTCAAGGTGGGTGGACCGGACCAGGAGTTTTAAATCAGACCGGTGGGTTTTTACTAGAGCACCGTCGTTTTTAGCTAGAGCATTGTCGTTTAGATCACCAAAGCCAAAAGTCAATACTAGTGACGATGAAGGAACTTCTTCTGCTGCTGCTCCTATCATGCCATCATCAGCTGTTGACTCTGCCCGCCCTCACAATTGA	1134	0.4665	MKNNQLFIFFILPGILLLSATKAQAQARNNQNDTNNGFTPGQNFDQFNPSFALIIVILVAALFLMGFFSIYIRRCSDTPSSNLVLPITNARRAARGLDASVIDTFPILEYSEVKIHKIGKEVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGDSVHGVPESNNESQTQDVEAQNDAVQTPTEEVTNNESDPVLLAPEVISLDKTLNRNRTRGSQSNRTRRFPRSHSTGHSLIQPGENTDRFTLKLPFKVRKQIMNRQLQRASSLITLPGESSLRQGYRTGGEGSSRGKSSRWVDRTRSFKSDRWVFTRAPSFLARALSFRSPKPKVNTSDDEGTSSAAAPIMPSSAVDSARPHN	377

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g04955	377	CDD	RING-H2_EL5-like	124	167	-	-
	Trre14g04955	377	MobiDBLite	consensus disorder prediction	176	260	-	-
	Trre14g04955	377	MobiDBLite	consensus disorder prediction	345	365	-	-
	Trre14g04955	377	SUPERFAMILY	RING/U-box	124	174	-	-
	Trre14g04955	377	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	21	263	-	-
	Trre14g04955	377	FunFam	E3 ubiquitin-protein ligase ATL6	87	173	-	-
	Trre14g04955	377	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	86	172	IPR013083	-
	Trre14g04955	377	Pfam	Ring finger domain	124	167	IPR001841	-
	Trre14g04955	377	MobiDBLite	consensus disorder prediction	179	211	-	-
	Trre14g04955	377	MobiDBLite	consensus disorder prediction	294	316	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g04955	Trre-Chr14	56264082	56265215	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g04955	11	339	Rapid Response to Elicitors	AT3G05200	45.294	1.18e-84	261

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g04955	K10664		-	gmx:100781706	457.988

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