Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre14g04955 | ATGAAAAACAACCAGTTATTCATCTTCTTCATACTGCCGGGAATACTCCTTCTCTCCGCCACAAAAGCCCAAGCCCAAGCCCGAAACAACCAGAACGACACCAACAACGGCTTCACCCCAGGTCAAAATTTCGATCAATTCAACCCTTCCTTCGCTTTAATAATAGTTATTTTAGTAGCTGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGTCGCTGCTCCGATACACCTTCCTCCAACCTCGTTCTCCCTATCACCAACGCTCGTAGAGCAGCGCGTGGACTCGATGCATCAGTAATCGATACTTTCCCGATTCTAGAATACTCCGAAGTCAAGATCCATAAGATCGGAAAAGAGGTTCTGGAGTGTGCCGTTTGTTTAATGGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCAAAGTGTGATCATGTTTTTCACCCTGAGTGCATCGATGAGTGGTTATCTTCACACACAACGTGTCCCGTTTGTCGTGCTAATCTTGTTCCACAACCTGGTGACTCAGTTCACGGTGTTCCTGAGTCAAACAACGAGTCACAAACACAAGACGTTGAAGCTCAAAACGACGCCGTTCAAACACCGACGGAAGAAGTAACTAACAACGAATCTGACCCGGTCTTACTTGCTCCTGAAGTGATTTCGTTGGATAAAACGCTGAACCGGAACCGTACGCGTGGATCTCAATCGAACCGGACGCGTCGTTTTCCACGGTCACACTCGACCGGACATTCATTAATCCAACCGGGTGAAAACACGGACCGGTTCACTTTGAAACTGCCGTTTAAAGTAAGAAAACAGATAATGAACCGGCAGTTACAACGGGCGAGTAGTTTAATTACTTTACCTGGAGAAAGTAGTTTGAGACAGGGTTACCGAACCGGAGGTGAAGGAAGTAGTAGAGGAAAAAGTTCAAGGTGGGTGGACCGGACCAGGAGTTTTAAATCAGACCGGTGGGTTTTTACTAGAGCACCGTCGTTTTTAGCTAGAGCATTGTCGTTTAGATCACCAAAGCCAAAAGTCAATACTAGTGACGATGAAGGAACTTCTTCTGCTGCTGCTCCTATCATGCCATCATCAGCTGTTGACTCTGCCCGCCCTCACAATTGA | 1134 | 0.4665 | MKNNQLFIFFILPGILLLSATKAQAQARNNQNDTNNGFTPGQNFDQFNPSFALIIVILVAALFLMGFFSIYIRRCSDTPSSNLVLPITNARRAARGLDASVIDTFPILEYSEVKIHKIGKEVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGDSVHGVPESNNESQTQDVEAQNDAVQTPTEEVTNNESDPVLLAPEVISLDKTLNRNRTRGSQSNRTRRFPRSHSTGHSLIQPGENTDRFTLKLPFKVRKQIMNRQLQRASSLITLPGESSLRQGYRTGGEGSSRGKSSRWVDRTRSFKSDRWVFTRAPSFLARALSFRSPKPKVNTSDDEGTSSAAAPIMPSSAVDSARPHN | 377 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre14g04955 | 377 | CDD | RING-H2_EL5-like | 124 | 167 | - | - | |
Trre14g04955 | 377 | MobiDBLite | consensus disorder prediction | 176 | 260 | - | - | |
Trre14g04955 | 377 | MobiDBLite | consensus disorder prediction | 345 | 365 | - | - | |
Trre14g04955 | 377 | SUPERFAMILY | RING/U-box | 124 | 174 | - | - | |
Trre14g04955 | 377 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 21 | 263 | - | - | |
Trre14g04955 | 377 | FunFam | E3 ubiquitin-protein ligase ATL6 | 87 | 173 | - | - | |
Trre14g04955 | 377 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 172 | IPR013083 | - | |
Trre14g04955 | 377 | Pfam | Ring finger domain | 124 | 167 | IPR001841 | - | |
Trre14g04955 | 377 | MobiDBLite | consensus disorder prediction | 179 | 211 | - | - | |
Trre14g04955 | 377 | MobiDBLite | consensus disorder prediction | 294 | 316 | - | - | |
Trre14g04955 | 377 | SMART | ring_2 | 125 | 166 | IPR001841 | - | |
Trre14g04955 | 377 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 167 | IPR001841 | - | |
Trre14g04955 | 377 | MobiDBLite | consensus disorder prediction | 294 | 309 | - | - | |
Trre14g04955 | 377 | MobiDBLite | consensus disorder prediction | 340 | 377 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre14g04955 | Trre-Chr14 | 56264082 | 56265215 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre14g04955 | 11 | 339 | Rapid Response to Elicitors | AT3G05200 | 45.294 | 1.18e-84 | 261 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre14g04955 | K10664 | - | gmx:100781706 | 457.988 |