Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04935 ATGGATCATCAAGGACACAATCAGAATTCGCAAATGGGGGTTGTCGGTAGCGGAGGTCAAATGGCGTACGGATCTAACCCATATCAGTCAAACCAAATGACTGGGGCCCCAGGAACAGTTGTTACGTCAGTCGGGAACATGCAACCCACTGGTCAACCTGCTGGAGCTCAGCGTCAACTTGCTTATCAGCATATTCATCAGCAGCAACAACAGCAACTTCAGCAACAACAGCAGCTTCAGCAACAGCTGCAATCTTTCTGGGAAAATCAGTGCCAAGAAATTGAAAATGTTACCGATATCAAGAACCACAGCCTTCCCCTGGCAAGAATTAAGAAGATCATGAAGGCCGACGAGGATGTGAGAATGATATCTGGTGAGGCACCGGTCTTATTTGCAAAGGCATGTGAAATGTTCATATCGGAGTTAACTATGCGTTCCTGGAACCACACTGAAGAGAAAAAAAGGAGGACACTTCAGAAGAGTGATATTGCTGCTGCAATCGCAAGGACTGATATCTTTGATTTCCTGGTTGACATTGTTCCCCGTGATGACGAAGTGCTGGCATCGATCCCAAGGGGAATAATGTCTGTTGGTGGGCCTTCTGATGCTCTTCCATACTGCTACATGCCCCCCCAGCATGCTCCTCATCCCTTCATGGCACCACAAATGTGGCCACAGCCTTCAGACCAGCAACCACCATCTCCAGATCACTAG 714 0.4804 MDHQGHNQNSQMGVVGSGGQMAYGSNPYQSNQMTGAPGTVVTSVGNMQPTGQPAGAQRQLAYQHIHQQQQQQLQQQQQLQQQLQSFWENQCQEIENVTDIKNHSLPLARIKKIMKADEDVRMISGEAPVLFAKACEMFISELTMRSWNHTEEKKRRTLQKSDIAAAIARTDIFDFLVDIVPRDDEVLASIPRGIMSVGGPSDALPYCYMPPQHAPHPFMAPQMWPQPSDQQPPSPDH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04935 237 MobiDBLite consensus disorder prediction 218 237 - -
Trre14g04935 237 FunFam Nuclear transcription factor Y subunit gamma 66 182 - -
Trre14g04935 237 Gene3D Histone, subunit A 61 182 IPR009072 GO:0046982
Trre14g04935 237 SUPERFAMILY Histone-fold 63 176 IPR009072 GO:0046982
Trre14g04935 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 104 167 IPR003958 -
Trre14g04935 237 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 68 209 - -
Trre14g04935 237 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04935 Trre-Chr14 56191752 56192465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04935 1 235 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.667 6.66e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre14g04935 CBFD_NFYB_HMF 2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04935 K08066 - gmx:100527803 330.487