Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04934 ATGGATCATCAAGGGCACAACCAAAATCCACCAAGGGGGTCAGTTGGTAGCGCAGATCAATGGCCGTTCGGATTTATGCTGTGTCAACCGAACAAAATCACCGGGGAACCTGTATCAGTTGGGGAAATGCAAGCCACTGGTCAACCTGCTGGAGCTCAGCTTGGTCAGCAGCAACAGCATAACCAAAACTCGCCAATGGAGGTTGTTGGTAATATAAATCAACGGCCGTTTGGATTTATGCCGAGTCTCTGTCAACCAAATGAAATCATTGGGGCCCCAAGATCAGTTGGCAGCATGCAATCCACTGGTCAACCTGCTGGGGCTGAGTTGGGTCCGTATCAACTTGCTTATCAGCAGTATTTTCATAGGCAGCAACAGGAGCAACTTCAACCTGCTGGGGCTCAGCTGGGTCCGTATCAACTTGCTTATCAGCAGTATTTTCATAGGCAGCAACAGGAGCAACTTCAGCAACTTCAACCTGCTGGGGCTCAGCTGGGTCCGTATCAACTTGCTTATCAGCAGTATTTTCATAGGCAGCAACAGGAGCAACTTCAGCAACAGCTGCAAGTCTTTTGGGCAAACCAATACCAAGAAGTCGAAAAGGTTACTGATTTTAATAACCACAGCCTTCCCCTGGCAGGGATCAAGAAGATTATGAAGACCGATGAGGATGTTAGAATGATAGCGGATGAGGCGCCTGTGATACTTGCAAAGGCCTGTGAGATGTTCATATTAGACTTGACCATGCGTTCACGAAACCAGGGTAAAACCAGAACACTTCAGAAGAATGATATCGGAGCAGCTGTCGCAGGAACTGATTACTTTGATTTCCTGGTGGACATTGTGCCTCACGAGAAAGTGTCAGATACTCCTGTATTTCAGTTTCCAGGGAACTTCTGCAATGGAGGTGGGTGCCAAACTGTGAATCCAGAAGGTCCATTGTTGCCATCAGAAACTGTAGATGACAGTGTACCTGTAATTCCTGCATTTCAGATTATAGAAGCGGACGAGGACATCAAGGAGGAAAATTATGATTAA 1038 0.4692 MDHQGHNQNPPRGSVGSADQWPFGFMLCQPNKITGEPVSVGEMQATGQPAGAQLGQQQQHNQNSPMEVVGNINQRPFGFMPSLCQPNEIIGAPRSVGSMQSTGQPAGAELGPYQLAYQQYFHRQQQEQLQPAGAQLGPYQLAYQQYFHRQQQEQLQQLQPAGAQLGPYQLAYQQYFHRQQQEQLQQQLQVFWANQYQEVEKVTDFNNHSLPLAGIKKIMKTDEDVRMIADEAPVILAKACEMFILDLTMRSRNQGKTRTLQKNDIGAAVAGTDYFDFLVDIVPHEKVSDTPVFQFPGNFCNGGGCQTVNPEGPLLPSETVDDSVPVIPAFQIIEADEDIKEENYD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04934 345 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g04934 345 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 209 269 IPR003958 -
Trre14g04934 345 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 154 291 - -
Trre14g04934 345 Gene3D Histone, subunit A 171 284 IPR009072 GO:0046982
Trre14g04934 345 FunFam Nuclear transcription factor Y subunit gamma 174 284 - -
Trre14g04934 345 SUPERFAMILY Histone-fold 185 278 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04934 Trre-Chr14 56182981 56184018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04934 167 296 CCAAT-HAP5 Transcription Factor Family AT1G08970 65.414 5.85e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre14g04934 CBFD_NFYB_HMF 3.6e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04934 K08066 - gmx:100776494 173.711