LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g04918	ATGCAAGACATTTTCGGATCAGTTCGCCGGTCACTAGTTTTCCGACCATCACCGGAGACCACCGAAGATCATTCACTCGGAGGAACAACCCTAGTTGACAAGATCGGTTACTGTATTCGTAATTCTAGAGTTTTCTCTAAACCTTCTCCGCCGTCTCCTCCTATTCCTAAAGAAACTGTTCCTCAAATCCGATGGCGAAAAGGCGAGTTAATCGGTTGTGGTGCTTTTGGTCAAGTTTATGTTGGAATGAATCTCGATTCTGGAGAGCTTCTTGCTGTTAAACAGGTTTTGATTGCAGCAAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCATGTAAAAGAGCTTGAGGAAGAAGTTAAACTGCTTAAGGATCTTTCGCATCCCAACATTGTTAGATATTTGGGTACGGTTAGAGAAGAAGATACCTTAAATATTCTCCTTGAGTTTGTTCCTGGTGGATCCATATCTTCACTGTTGGGGAAGTTTGGAGCCTTTCCTGAGGCCGTCATAAGAACTTACACGAAGCAGATATTGCTTGGACTCGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATCAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAAGTAGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACCGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACAGTGATTGAGATGGCCACGGGAAAGCCTCCTTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCACCCACCAATTCCTGATCATCTTTCTGCTGGAGCGAAAGATTTTCTGCTAAAGTGCTTGCAGAAGGAACCAAATTTGAGGCTATCAGCATCGGAACTGCTGCAGCATCCCTTTGTTACTGGTGAAAATATGGATTTGATTTCTCAGTCATCTACTGCCATGGGAAGTTTTAGAGCATCTTCACCATCATGTGCTCCAAATGTTGAATCCTTACTTTGCTCTACAGAAAATCCTCTGGACTCAGGAAATAATCATTTATGGGGAATGAACAATGATGATGACATGTGTGTGATTGATGACAAAGAAGAGTTCTCAGAGTGTAATGTCAAATACAAATCATTGATGCCCGATAATATTGAGAGTTTCAACCCTATGTCTGAACCTTTGGATGATTGGGGCTGTAAATTTGACGCAAGTCCAGAACTGGTAAATAGAGAAGTTAGTTTGGACACTGATGAAAGTCGCATGTCAAGTGTTCAATTAGAGTCTAATAAGGAACAGAAAGATTTATCCTTTCCATGTGTGCCATCTCTATCAGAAGACGATGATGAGCAAACAGAGGTCAAAATTAAAGCTTTTTTGGATGAAAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTTTTCAACAATTTAAATACATCTTGTTCACCCAATGTGATTGATAGTCCAAGTGATGATAACGCCGCTCGAAAATACTTGAAATTACCTCCTAAAAGCAAGTCACCAAGTCGGATGCCAATTAGCTCTCCATCTAAAGCAGTTGACAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCAGCAACTGTTGGAAATGTAAATAGTCATGGTTCACAGGATGTTCCAGCATCTCCCGTAAATGAACGGAAAGGAATGGTAGTTGACTCCCAGCAGGAACACTTTAGCCCAAGTTTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAACGAGAAATGATGCGCCAAGCTAATATGACAGGAAAGACATCTTCACCAAAGGATCGAGCTTTAAATCGACAGAGAGAAAGGACAAGATTTGCTTCTCCCAGCTAA	1962	0.4256	MQDIFGSVRRSLVFRPSPETTEDHSLGGTTLVDKIGYCIRNSRVFSKPSPPSPPIPKETVPQIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILLGLEYLHKNGIMHRDIKGANILVDNKGCIKVADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAGAKDFLLKCLQKEPNLRLSASELLQHPFVTGENMDLISQSSTAMGSFRASSPSCAPNVESLLCSTENPLDSGNNHLWGMNNDDDMCVIDDKEEFSECNVKYKSLMPDNIESFNPMSEPLDDWGCKFDASPELVNREVSLDTDESRMSSVQLESNKEQKDLSFPCVPSLSEDDDEQTEVKIKAFLDEKALELKKLQTPLYEEFFNNLNTSCSPNVIDSPSDDNAARKYLKLPPKSKSPSRMPISSPSKAVDNAGSPGSNGRSSATVGNVNSHGSQDVPASPVNERKGMVVDSQQEHFSPSLSFSERQRKWKEELDQELERKREMMRQANMTGKTSSPKDRALNRQRERTRFASPS	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g04918	653	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	57	334	-	-
	Trre14g04918	653	FunFam	Serine/threonine-protein kinase STE11	61	155	-	-
	Trre14g04918	653	CDD	STKc_MAPKKK	64	328	-	-
	Trre14g04918	653	MobiDBLite	consensus disorder prediction	587	606	-	-
	Trre14g04918	653	Pfam	Protein kinase domain	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g04918	653	MobiDBLite	consensus disorder prediction	509	580	-	-
	Trre14g04918	653	FunFam	Mitogen-activated protein kinase kinase kinase 2	64	356	-	-
	Trre14g04918	653	SUPERFAMILY	Protein kinase-like (PK-like)	64	355	IPR011009	-
	Trre14g04918	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Trre14g04918	653	Coils	Coil	605	629	-	-
	Trre14g04918	653	MobiDBLite	consensus disorder prediction	617	653	-	-
	Trre14g04918	653	ProSiteProfiles	Protein kinase domain profile.	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g04918	653	SMART	serkin_6	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g04918	653	ProSitePatterns	Protein kinases ATP-binding region signature.	71	94	IPR017441	GO:0005524
	Trre14g04918	653	MobiDBLite	consensus disorder prediction	536	576	-	-
	Trre14g04918	653	Gene3D	Transferase(Phosphotransferase) domain 1	63	351	-	-
	Trre14g04918	653	MobiDBLite	consensus disorder prediction	438	468	-	-
	Trre14g04918	653	Coils	Coil	98	125	-	-
	Trre14g04918	653	MobiDBLite	consensus disorder prediction	442	456	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g04918	Trre-Chr14	56121365	56126753	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g04918	1	652	MAP Kinase Kinase Kinase	AT1G54960	57.183	0.0	683

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Trre14g04918		Pkinase	1.1e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g04918	K20606		-	gmx:100807537	1033.09