Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04916 ATGGATAGAGTTGAAGAAGCAGTACCAAAATCGGACGAGGAGTACTCAGATTCGGATTACTCGGACTCGGATGACTCGGATTTGTACTTGGATGTGAAACACAAGAAATACAGTTGTGGTGATGGTGAGAAATTATCTGTGTGGTGGGATTTGGAAAACGGGGATCTTTACAATCATTATCGTCCTCGTCAAATAATGAAACTAAAAAACAAATTTCATGAGATGAACGGCCATGGTCCTCTTTCCATCTTTTGCTACGGGGACACAACTAAAATTCGAGAATCTGTAAGGAATTCTCTCATCTGCATCGGAGCTCGCTTCAAATATTATTCTGAAGATATGAAAGATTGGTTTTATGCGAACATCATTATTGAGATGCTGAAATGGGCAAAGGAAAACCCTCCACCTGCAACCCTTATATTGATTTTGGATGATGGACAAACTTGTTATGTCGCCGGGTATCTACAAGCAATGGGCTATAAGTTAGTTGTTGCACAATTCAAAGAATCACAACAACATGGTGATAGTAGCCTTTTTCCATCAGATTCAGATAATAAGATGGATGATGGAGTTGAAGCAGTACCAAAAGAGAATGTGGACTTCTGA 606 0.396 MDRVEEAVPKSDEEYSDSDYSDSDDSDLYLDVKHKKYSCGDGEKLSVWWDLENGDLYNHYRPRQIMKLKNKFHEMNGHGPLSIFCYGDTTKIRESVRNSLICIGARFKYYSEDMKDWFYANIIIEMLKWAKENPPPATLILILDDGQTCYVAGYLQAMGYKLVVAQFKESQQHGDSSLFPSDSDNKMDDGVEAVPKENVDF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04916 201 PANTHER LIMKAIN B LKAP 25 168 IPR024768 GO:0005777|GO:0010468
Trre14g04916 201 CDD PIN_limkain_b1_N_like 46 166 - -
Trre14g04916 201 Pfam NYN domain 44 168 IPR021139 GO:0004540
Trre14g04916 201 MobiDBLite consensus disorder prediction 1 16 - -
Trre14g04916 201 MobiDBLite consensus disorder prediction 1 25 - -
Trre14g04916 201 MobiDBLite consensus disorder prediction 185 201 - -
Trre14g04916 201 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04916 Trre-Chr14 56112805 56113410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04916 44 166 C2H2 Transcription Factor Family AT5G61190 33.065 8.16e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04916 - - nnu:104607146 81.2629