Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04909 ATGTCAGATTCACAGTCAAATTCAGATGTTTTCAGTGTTCGAATTGTCTCCATAGATCATTACATGGCACCGCCAATTCCAGACATCGATATCTCTTACAGTAACTTCCATGGTGGAAAAGTGAATGAAGTTCCTGTAATAAGAGTATATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATACATGGAGCTTTACCTTATTTATATGTGCCGTGTTCAGATATACCACTTCAACTAGACCAAGGTGATGCATACACCTATACAGTAGCTGCTTCTCTTGAGAAAGCCTTGAAGCTTAAAGGCAGTGCTGGTTCATCGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCGCTCATTTGAAGAGTTTTTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCTCGTGCAGCAAATCATCTCTTGGCAGGTGCTGTTCTTGATAAAAGCTTACAGCCTCACGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATGAGGTTCCGCCATCCCATGCCGGATTCTACTCACAAGAAATTAGACATCAATAGCCAGCAGCGAAAGGCAGATCCAGGTGCTGATGTATGTTTAGAGTCAAAACTGTGGACATCTTCCATGATCTCAGTTGACTGGATGTGGTCACTGCCTAGTGAATTTGGTGCTTCATCAAATGATAAGGCTCACTGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGGGATGCTTCTGTAGATGAGATTCTTAATCAGCAATTTAAAATGTTTTCATCTCTCTCACAAACAAGCTCAAATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCGGAAACGAACGGGGATTCATGAGGTTACTATGACTTCTGATCCGTGTAAACCACTACCAGAAGATGTCATAAAACTTCTCTCATCTGGTCTCAACTTTCAGAATAAACTTATTCAATTGTGCAGTGAAGCTGAGACCACTTTATTTTGCACTCCTTTGGAGAAAGAACTCAGAGAAACAGACATAATAGGCTCAGCATCGCCACCAGCTTCATTGTGTGAAAATGCCAAATTGCTTGAGGAAGGGACTGCTACAAGTCTCAATTTATTGAAAATTGGTGAAATGCAATCAGCTGAAAAGATCGGAATGTTGGACATAAAGGATGCTGATATGGAAGCACAAAATCTTCTTAAGTGGCTTGCGACTTCTCAAGCCGCAGAGGATATAAACTCTGATGATGAACTTGCTTGTGAAACAATCGTGAGTCCCTTGCTACCTGCTGCAACAATTGATAAGATGCTGGAGAAAGCGAATATGGCTTATGAGAGTGAGTCCCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGGATGAGTTAGACCTTCCAAAGAAAAAGCCTCCTCCTTCCTTTGATCACAATTGTCCTGTTGAAGCTTCATCTGAGAGTATGATACCTCAAGTTGATGGTTCTAACGATGATGAATTCTCAAGTCCATGTGCTAATTTGGCTGGAACTTCTTCTGCAGTTGAGATAAACAGTGAATACAAAAGAGCTTCTGAGTACCATTTACTGCACAATACAAACACACGAACAGTTACTGCAGATAAAAGGAATAGACAATGGGGGTCTTTGCCTTTTTCCATGACCGGAAAGGTTAATAATGATGGAGAGCATACTACTTCACAAGTGGCTCATCTGTTTGAAAGTGAAACCAGGGATTCTGCTCTCTCAGATTACTTAACCAGAAACGAGGTTAAAAATAATACTTGTATTAAAAGAAATGTTGGTGAAGGCGCTTCAGATTCAAAAGAAGTACATAGTTTAGTTAGCTGCTCTATACGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACATGATGAGCTTGAATCTGGAACTGCAAAGAAGCTTATTTTGGACAGGCACGGGGGACCAAAAACAAGCCTTTGGCAACAACTTGAATTGGAAACAATGCAAACCGATGAATTAGAAACAAAACTCCAGACAAATTCTGATCATGAAGTGAGCAGTTGTGATAATTTAGTATGTGGGAAACAGTTACTTCCATCTGGCAGTGATAGTTTTTTTAATATATCAAAAGATGAATGTTTAGGTCAACATGAAAAGGAGTGTATAGAAGCAAGTATGGTGTTGAGAAACTCCACAAATCAAAGTTCTTCTTCAATGCATGAAGGGCCAGACCTTCTTGAAACTTCGCATTTTATTGATGCCATGGACAAACCGGTGGCTTGCAGGGAGAAACATACTAAGGATGGAACCACTTATGCAAAACCTGTAGCTTCTGATGCATATACCCTGAGTTCCTCCGTAGATTCTCAGTTGAGAACTGATGATCATAAAGTCAGAGCTCCTGAGAGGTGTCAGCAAACTGATTCTGCTGCTTCAGGTAGTAGACAGGACTTGTTAATTGATGACGAAGTGTCGGGCAAAAGTAACTGCATGGATAAAAAAATTTGTGGTAGCATATGTTTTGTGCAGCATGAACAGATGAAATCTTACGAGCATGCTGTGGGAAAAAGTGCTGCAAGTGACACAAGAGTATTGCTAAGTGAAAAGGTTGATAGTCAAAAGCTGGGTAAAAAATTGTTGTGTGAGACTGTTGGCTCAGAACCCATTGTTGATGACCTGAAGAGTAATCACGTGAAATTAACTGAAATAACCATAGGCAATAACTCTTCAGTTGACAAGAATATTGAAAGCAATTTGTCCTTGCAACCCTTCTCTGATACCCATTTACATTTGGACGAGGATGATGAAATGGCAGGGAATGCTCTGGATGATTTTCTTCCTATTTCTGCAAGGAATTCTCAGAAACAGATGGAATCTTGGAAAAAGTGTGTTACTATTAAAACCCCCGGATCCTCTGGGAGAAACAGTGTTTCCACTTACTATCAAAATGATGGCTCTCACCTATACCTATTAACACCTAATATTCTGCCTCCTGCTGCCAGTTCTGTGCAGAGATGGCTATTTTGTGATGAGAGAGAACCTGATGCACAGGACCAGGATGTACCTAAATGCACATCTGGACCTCCTCGTAGGCATTCTCCTGATCAAGTGCGTCAAGAACCTGGTGCAGATGTGTCTAAGTGCACATCTGGACCTCCTCTTAGGCCTGAGCTGTATCAAGATGCCTGCACAGAAAAGAAGCTTCCATGCATTAGCGAAGGACAAACAGAAGGAATAAAAGCATGCATGAATCGCTCTCAAGATATTTCGCAGATATCAGGCCCTGGTGAGAATTCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGGGACCCTGCAAGTGTTGGCCGTGGACAGCAATTGACATTACTTAGTATAGAGGTACTTGCAGAATCTAGAGCAGACCTTTTACCTGATCCTCAATTTGATAGGGTAAATATTGTAGCTCTTGGTTTTCAGAACGATTGCGATGCGACTATTGAAGTTCAAGTTCTTTTGCATAGTAAATTTGTACCTTGTCAGAGAAGTCTTGATGGCTTATCAGACTGCAAAGTACTGAACTTCACTGATGAGAAGCACTTGTTTAAAGAATTTATGAAGATTGTGTCTTCATCTGACCCAGATATATTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCCTGGATTAATTCTCAAGACACCGAAACATCTGAAAAAAGTATCTTGGAACCAGACATTTCGGATACTCCTAGTCTTGATTGTTGTGTGCAAGAAAGTTCAATAATCGAGGATGAATGGGGACGTACACATGCCAGCGGAGTTCATGTAGGTGGAAGAATTGTCCTTAACTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGGAAAGTTCCTTTGCTTAACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGGAAAGCAAGATATCAGTGTATCAAATATGTTATGGATAGAGCAAAGCTGAACCTCGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGATCACAATATCGGGTTGAATCCATGTTTTTGAGGTTGGCCCACACACAAAACTATGTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTCGTGCTTGACTTCCAATCATTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGGGGCGTCAAAGACTAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTGCAGGATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCAAAGAGGTACACTTCCCCGTCTATTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGTCTCCTTCAGAGCAAGTCCTTCAGCGGATATTTAATGCACGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCGGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGCATCGTTCAATGTGGACGGTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAGGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTGTCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAATCCCGTCACCTTGAAGATGGAGAAAGTTTATCACCCGTGTTTCCTCATTACTAAAAAGAGATATGTTGGCTACAGTTATGAAAGCCCCAATCAAATTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACATGTGAAGCAGTTGCAAAAATAATGGAGCGATCTTTGAGACTTTTTTTTGAGCACCAGAGTGTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCAGGCAGAGTTTCCCTTAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGATTGATCGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTCTTGGCAATTGATTCCCCATTCAGAATAAATGATTTATATTACATTAATAAGCAAATAATACCGGCTTTACAGCGAGTATTTGGGCTTGTTGGCGCTGACCTGAACCAGTGGTTTGCAGAGATGCCTCGCCCTATAAGAGAAGCTTCTGTAAAGCATGCATTCACTCCAAACTTCCATCGAACCAGAATTGATTATTACTATCTCTCGAAACACTGTGTACTCTGTGGTGAGTTGGTCCAGGCATCAACCCGTTTATGCAATCAATGTTCTGAAAATGAGGTGGCTGCTGCGACAGCAGTGATTGGTAAAACTTCAAAGTTGGAGCAGGAGATGCAACATCTTGTGTCTATATGTCACCACTGTGGAGGCGGTGATAGGCTTCTTGAAAGTGGTGTGAAATGCACATCGATTTCATGCTTGGTGTTTTATGAGAGGCGAAAAGTTCAGAAAGAGCTACTAGCAGCCACCCATGTTGCTGCAGACAAAGGCTTCTACCCAAAATGCACGGTAGAATGGTTTTGA 5994 0.4126 MSDSQSNSDVFSVRIVSIDHYMAPPIPDIDISYSNFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDQGDAYTYTVAASLEKALKLKGSAGSSRQHVHGCSLVRARKFYGYRSFEEFFVKIYLYYPQDVSRAANHLLAGAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPMPDSTHKKLDINSQQRKADPGADVCLESKLWTSSMISVDWMWSLPSEFGASSNDKAHCPKRQSICELEGDASVDEILNQQFKMFSSLSQTSSNVNMVQSLVPIWEEQRKRTGIHEVTMTSDPCKPLPEDVIKLLSSGLNFQNKLIQLCSEAETTLFCTPLEKELRETDIIGSASPPASLCENAKLLEEGTATSLNLLKIGEMQSAEKIGMLDIKDADMEAQNLLKWLATSQAAEDINSDDELACETIVSPLLPAATIDKMLEKANMAYESESQQECQDILDSIDDMDELDLPKKKPPPSFDHNCPVEASSESMIPQVDGSNDDEFSSPCANLAGTSSAVEINSEYKRASEYHLLHNTNTRTVTADKRNRQWGSLPFSMTGKVNNDGEHTTSQVAHLFESETRDSALSDYLTRNEVKNNTCIKRNVGEGASDSKEVHSLVSCSIRDLMRRKRSYRVEHDELESGTAKKLILDRHGGPKTSLWQQLELETMQTDELETKLQTNSDHEVSSCDNLVCGKQLLPSGSDSFFNISKDECLGQHEKECIEASMVLRNSTNQSSSSMHEGPDLLETSHFIDAMDKPVACREKHTKDGTTYAKPVASDAYTLSSSVDSQLRTDDHKVRAPERCQQTDSAASGSRQDLLIDDEVSGKSNCMDKKICGSICFVQHEQMKSYEHAVGKSAASDTRVLLSEKVDSQKLGKKLLCETVGSEPIVDDLKSNHVKLTEITIGNNSSVDKNIESNLSLQPFSDTHLHLDEDDEMAGNALDDFLPISARNSQKQMESWKKCVTIKTPGSSGRNSVSTYYQNDGSHLYLLTPNILPPAASSVQRWLFCDEREPDAQDQDVPKCTSGPPRRHSPDQVRQEPGADVSKCTSGPPLRPELYQDACTEKKLPCISEGQTEGIKACMNRSQDISQISGPGENSSFTPLSQIGFRDPASVGRGQQLTLLSIEVLAESRADLLPDPQFDRVNIVALGFQNDCDATIEVQVLLHSKFVPCQRSLDGLSDCKVLNFTDEKHLFKEFMKIVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDTETSEKSILEPDISDTPSLDCCVQESSIIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPLLNHKVLTKWFSSGPGKARYQCIKYVMDRAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVGASKTNTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPSKVQRGTLPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTVKESFQIGSEIASAITAMNPNPVTLKMEKVYHPCFLITKKRYVGYSYESPNQIEPVFDAKGIETVRRDTCEAVAKIMERSLRLFFEHQSVLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRIDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFAEMPRPIREASVKHAFTPNFHRTRIDYYYLSKHCVLCGELVQASTRLCNQCSENEVAAATAVIGKTSKLEQEMQHLVSICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLAATHVAADKGFYPKCTVEWF 1997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04909 1997 PRINTS DNA-directed DNA-polymerase family B signature 1463 1476 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre14g04909 1997 PRINTS DNA-directed DNA-polymerase family B signature 1572 1584 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre14g04909 1997 PRINTS DNA-directed DNA-polymerase family B signature 1628 1636 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre14g04909 1997 FunFam DNA polymerase 1705 1873 - -
Trre14g04909 1997 Gene3D Helix hairpin bin 1529 1589 - -
Trre14g04909 1997 Pfam DNA polymerase family B 1404 1851 IPR006134 GO:0000166|GO:0003677
Trre14g04909 1997 Gene3D - 1160 1446 IPR036397 GO:0003676
Trre14g04909 1997 MobiDBLite consensus disorder prediction 801 834 - -
Trre14g04909 1997 CDD POLBc_zeta 1411 1859 - -
Trre14g04909 1997 Pfam DNA polymerase family B, exonuclease domain 1196 1282 IPR006133 -
Trre14g04909 1997 Pfam DNA polymerase family B, exonuclease domain 55 207 IPR006133 -
Trre14g04909 1997 Pfam C4-type zinc-finger of DNA polymerase delta 1896 1969 IPR025687 -
Trre14g04909 1997 CDD DNA_polB_zeta_exo 1135 1385 - -
Trre14g04909 1997 MobiDBLite consensus disorder prediction 1030 1070 - -
Trre14g04909 1997 SUPERFAMILY Ribonuclease H-like 27 1409 IPR012337 -
Trre14g04909 1997 SMART polmehr3 1136 1642 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre14g04909 1997 SUPERFAMILY DNA/RNA polymerases 1450 1863 IPR043502 -
Trre14g04909 1997 FunFam DNA polymerase 30 195 - -
Trre14g04909 1997 FunFam DNA polymerase zeta 1530 1589 - -
Trre14g04909 1997 FunFam DNA polymerase 1145 1446 - -
Trre14g04909 1997 ProSitePatterns DNA polymerase family B signature. 1630 1638 IPR017964 GO:0000166|GO:0003676
Trre14g04909 1997 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Trre14g04909 1997 Gene3D - 1705 1869 IPR042087 -
Trre14g04909 1997 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1990 IPR030559 GO:0006281|GO:0016035|GO:0019985
Trre14g04909 1997 Gene3D Palm domain of DNA polymerase 1449 1694 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04909 Trre-Chr14 56042042 56056544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04909 1218 1979 Core DNA Replication Machinery Family AT5G63960 29.442 1.10e-86 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04909 K02350 - gmx:100777934 3004.54