Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04880 ATGAGTCGCAGGTCAAGTCGAACAATATATGTTGGCAATCTTCCTGGTGATATTCGCGTGAGAGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATTGTTGACATCGAGTTGAAGGTTCCTCCAAGACCACCGGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCGTTATCGAGATGGATACAAGTTTGATGGCTTGCGATTAAGAGTTGAATTTGCACATGGTGGGCGGGGCTATTCATCGCCGGTAGACCGTTATAGTGGTAGCAGCGGTAGCCGTGGAGTGTCGAAGCATTCTGAGTATCGTGTTCTGGTCACTGGATTACCTTCTTCGGCTTCATGGCAAGACCTAAAAGATCACATGCGTAGAGCTGGTGATGTATGTTTCTCTCAAGTTTTCCGTGACCGGGGTGGCATGACTGGGATAGTGGATTATACAAATTATGACGATATGAAATATGCTATTAGAAAACTTGATGACTCAGAATTCCGAAATGCATTCTCTCGGGCATACATACGAGTGAGGGAATATGATCGACGGAGCTATTCTAGGAGTCCCAGTTGTGATACAAGGAGGAGTTATTCTAGAAGCCTTAGCCGCAGTCCTTATATGTCACGAAGTAGAAGCCGCAGTCGAAGTTATAGCTATAGTAGCAGGAGCAGCAGAAGCTTGTCTCCAAAAGTGAAACGTACTCGGCGGTCTTTATCTCGTTCAAGATCGTTGTCAAGATCGGAATCAGCAAATTCATCTGTCAGATCTGAACGCAGCCAATCTGCCAACTCTGGAGACCGCTACTGA 819 0.4554 MSRRSSRTIYVGNLPGDIRVREVEDLFYKFGPIVDIELKVPPRPPGYAFVEFEDARDAEDAIRYRDGYKFDGLRLRVEFAHGGRGYSSPVDRYSGSSGSRGVSKHSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSCDTRRSYSRSLSRSPYMSRSRSRSRSYSYSSRSSRSLSPKVKRTRRSLSRSRSLSRSESANSSVRSERSQSANSGDRY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04880 272 Gene3D - 2 108 IPR012677 -
Trre14g04880 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Trre14g04880 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Trre14g04880 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Trre14g04880 272 MobiDBLite consensus disorder prediction 189 272 - -
Trre14g04880 272 FunFam serine/arginine-rich splicing factor SR34A-like 108 185 - -
Trre14g04880 272 Gene3D - 109 185 IPR012677 -
Trre14g04880 272 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Trre14g04880 272 MobiDBLite consensus disorder prediction 247 272 - -
Trre14g04880 272 CDD RRM2_SF2_plant_like 108 183 - -
Trre14g04880 272 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 267 - -
Trre14g04880 272 MobiDBLite consensus disorder prediction 194 231 - -
Trre14g04880 272 SMART rrm1_1 109 178 IPR000504 GO:0003723
Trre14g04880 272 SMART rrm1_1 8 78 IPR000504 GO:0003723
Trre14g04880 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04880 Trre-Chr14 55827905 55831743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04880 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 4.96e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04880 K12890 - gmx:100794282 352.829