Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04849 ATGAAGCCGTTATCAACAGTTCCGTTGGCTACTTTGATTGGCCGTGAGATTCGAAATGAGAATGTTCAAAAACCTTTTGTCAAATATGGACAAGCTGGATTAGCAAAAAAAGGAGAAGATTACTTTTTCATTAAAACTGATTGTCATAGGGTTCCCGGTGATCCGTCAACTGCGTTTTCCGTCTTTGCGATTTTTGACGGGCATAACGGTATATCGGCTGCTATTTATACAAAGGAAAATTTGCTTAATAATGTTTTGAGTGCAATGCCACAAGATATCAGCAGGGATGCATGGCTACAGGCCCTTCCTCGCGCTTTAGTTGTTGGTTTTGTGAAGACTGACACAGAGTTTCAGAAGAAGGGGGAAACTTCTGGGACGACGGCTACATTTGTTCTGGTTGATGGCTGGACTGTCACTGTTGCATCTGTTGGTGATTCCCGTTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGACCATAGACTGGAAGAGAATGTAGAAGAGAGAGAGCGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATATATTTGGGGGAAATGCGGTAGGGCCTCTTCGCTGCTGGCCTGGAGGATTGTGCCTATCTAGATCAATAGGAGACACAGATGTCGGAGAATATATTGTGCCAATACCACATGTTAAGCAAGTGAAACTTTCAAATGCTGGTGGAAGGCTTATTATAGCCTCTGATGGTATTTGGGATGCTTTATCTAATGATACGGCTGCTATGTCTTGTCGAGGTCTACCTGCAGAGCTTGCTGCTAAGCTAGTGGTTAAGGAAGCTCTAAGATCCAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCTGACCACCCTGTATTACCACCAACTCCAAGAAAGAAACATAATATGCTGACCACGCTTCTCTTTGGAAAGAAATCTGAGAACTCTACAAACAAAGCTACTAGCAAGCTTTCTGCAGTCGGTGTTGTTGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTATAGAAAGGCTTGGTAAGGATTTTCCATTTGATAAGAATTCTGAGATTTTCCGCTGTGCGATTTGCCAAGTGGATCAACCCCCCGGCAATGGTTTATCAGTGAACTCTGGACCTTTCTTTTCTCCAGCATCTAAGCCATGGGAAGGCCCATTTCTTTGCACAAATTGTCGGAAGAAAAAAGATGCCATGGAAGGAAAGAGGCCTAGCTCACCTACCATTACAGCACAATAA 1269 0.4358 MKPLSTVPLATLIGREIRNENVQKPFVKYGQAGLAKKGEDYFFIKTDCHRVPGDPSTAFSVFAIFDGHNGISAAIYTKENLLNNVLSAMPQDISRDAWLQALPRALVVGFVKTDTEFQKKGETSGTTATFVLVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGGNAVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSNDTAAMSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPPTPRKKHNMLTTLLFGKKSENSTNKATSKLSAVGVVEELFEEGSAMLIERLGKDFPFDKNSEIFRCAICQVDQPPGNGLSVNSGPFFSPASKPWEGPFLCTNCRKKKDAMEGKRPSSPTITAQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04849 422 SUPERFAMILY PP2C-like 28 290 IPR036457 -
Trre14g04849 422 CDD PP2Cc 36 290 IPR001932 -
Trre14g04849 422 Gene3D - 25 294 IPR036457 -
Trre14g04849 422 ProSiteProfiles PPM-type phosphatase domain profile. 25 290 IPR001932 -
Trre14g04849 422 PANTHER PROTEIN PHOSPHATASE 45 289 IPR015655 GO:0004722|GO:0006470
Trre14g04849 422 SMART PP2C_4 18 288 IPR001932 -
Trre14g04849 422 Pfam Protein phosphatase 2C 55 259 IPR001932 -
Trre14g04849 422 SMART PP2C_SIG_2 43 290 IPR001932 -
Trre14g04849 422 FunFam probable protein phosphatase 2C 5 28 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04849 Trre-Chr14 55627031 55629248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04849 5 420 PP2C-type Phosphatase Gene Family AT1G09160 76.442 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04849 - - gmx:100807886 746.117