Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04845 ATGGTTAAGGGAGGAAAGGTTAGTAGAAAAGGAAATTTGAGGAAAAAGGATAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTCGTTTCGGATGATGTTGGGAATGTATCTGATTGTCCGGAGGATGATTGTTTCTCTTTGGATGGATGTGCACCCGAGGATAGTTTTGATGGGTTTGTAGAAGATGAGGATGGGGAAGAGGAGGAAATTCAACCTGTGACGAAATTTAATAGATCAAGGGCTAAAACTAAAACTGGCGTAAGGAGTCGGAAGGAAAATGCAAGTAAAACCTCGCGGAAGAGACAGAGGATTACATACAAAGAACAACCTGAAGAAGAAGAAGAAGAATGGGATGAGAAAGAAGAGGAAGACGAAGTAGAAGAAGAGGAAGAAGATGATGATGATTACGATGATGTTTATGAAGAAGAAGAGGAGGAGGAGGAAGATGTAAAAGAAGACGAAGAGGAGGAGGTGGATGTAAAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGTGGAAGAAGTAAAAGAAGAAGAAAAAGAGGAGGAGAAGGAGGAGGTGGAAGAAGTAAAAGAAGAAGAAAAAGAGGAGGAGGAGGAGGAGGAAGAAGTAAAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGATGGAAATGATGTGGACGAGGATTTCAGTTATGGTGACGATGAATTTATACCGGAGGAAGAAGATTACACTGATGAGGACGAAGAACAAACAAGAGGCAGAAAAAAGAAAAAGGAGGATTTCAGTTATGAAGATGAAGAATTTATACCGACAGAAGAAGATTACACAGATGAGGACGAAGAAGAAACAAGGGGCATAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCGGCTTCTAGCAGAAGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGGCGAAAGAATGGAGGATCGAAGAGGAAAGTAGAGTGTGATGATGTAGATGATTTTTCGGATGATGGCCCAGCCATCAGAACAAATAGCAGAAATAAATCAGTCCTGAAAAGGAGAAGAGTTATCCTTGAAGATGCCAATTCCGGTTCAGATTGTGAGACTAGACAATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCTATGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGAAGAGCTTCTCTTCGAATGAAAAATGAAGTGGTTAGAGTACATGAAGATCTACACCAGCAACGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGATCTGAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATATGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAACAGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGGTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGAAGAAGCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCCACTGAAGAAGAACTGAGGAGCTACATTGATCCATACGAGTCTGTTATTTGTTCAGAGTGCCATCTAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGCATGAAGTACCTGAAGGTAACTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGACAACCCAAAGCCTGCCTTCCAGACCATCACCTGTTCATGTACGAGAAAGTATCGACCTGAACTTGATATCTTCACCTCATACATCTTTTAGTCAAGGATTCGGCCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCCGAAGGAGCTTCTCCAATGTCTGGAGGCGGGGCACCGACCTTATCAGAGAGGCGCTGGATACACCGTCAAATTCAGCAGCTACGTTCAATAGATAGAATGACTACTACAAATGGCAGAATTAATGGTGTTCCAGCTACCACCAATACAAATGGAGATCCCTTCTCCATAATTATGAGCAATTCAAGAAGGCCAGTGGTTCAGGATTCAAACATCGGGCCTGTGAATTCTGTTATTTGGCCTGGAATTTTGGGGGCACACACCTTATCAGATAATGGACCAATCCACCCGTGCAGCAGCAGATCAAACATTGACATCGAGGGTAGTATGCCCCTTGCCATCAATGAAGAAGGTAACTTGCACATTGTAAAGGAGCGGTTGCAGTCGATGGTTAAAAGCCATCTGAAGAGATTGTCTCAAGATACTGATTTGGGTTATAATACTTACAAGGACATTGCAAGTAGTTCGACGCATACCATACTCGCTGCTTGTGGTCTCGAGCATAAGACGAGTGAGGTTTGTAATGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAACGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCATTTGTAGGAGATGTGGTTAAAAGGATATTGGACACAAGAATGTCTTCACAGTGGTTAAGATTAGGACTTTAG 2688 0.4267 MVKGGKVSRKGNLRKKDRSKGGGSDDSDEDYVVSDDVGNVSDCPEDDCFSLDGCAPEDSFDGFVEDEDGEEEEIQPVTKFNRSRAKTKTGVRSRKENASKTSRKRQRITYKEQPEEEEEEWDEKEEEDEVEEEEEDDDDYDDVYEEEEEEEEDVKEDEEEEVDVKEEEEEEEEEEVEEVKEEEKEEEKEEVEEVKEEEKEEEEEEEEVKEEEKEVEEVDGNDVDEDFSYGDDEFIPEEEDYTDEDEEQTRGRKKKKEDFSYEDEEFIPTEEDYTDEDEEETRGIKKKNNGMKMGKKKALKKRVSAASSRSRKRSGSRVSKKPKRKRRRKNGGSKRKVECDDVDDFSDDGPAIRTNSRNKSVLKRRRVILEDANSGSDCETRQSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMKNEVVRVHEDLHQQRKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGHEVPEGNWYCDGCRPVALASLNSQAQESDLRATTQSLPSRPSPVHVRESIDLNLISSPHTSFSQGFGHLSSSRFSGRSAEGASPMSGGGAPTLSERRWIHRQIQQLRSIDRMTTTNGRINGVPATTNTNGDPFSIIMSNSRRPVVQDSNIGPVNSVIWPGILGAHTLSDNGPIHPCSSRSNIDIEGSMPLAINEEGNLHIVKERLQSMVKSHLKRLSQDTDLGYNTYKDIASSSTHTILAACGLEHKTSEVCNVPPPSVCPHIELIAGGQTSMIKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGL 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04845 895 MobiDBLite consensus disorder prediction 90 114 - -
Trre14g04845 895 MobiDBLite consensus disorder prediction 246 262 - -
Trre14g04845 895 SMART ring_2 468 509 IPR001841 -
Trre14g04845 895 MobiDBLite consensus disorder prediction 115 245 - -
Trre14g04845 895 Pfam PHD-finger 557 603 IPR019787 -
Trre14g04845 895 SUPERFAMILY FYVE/PHD zinc finger 530 603 IPR011011 -
Trre14g04845 895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 525 IPR013083 -
Trre14g04845 895 ProSiteProfiles Zinc finger PHD-type profile. 555 604 IPR019787 -
Trre14g04845 895 MobiDBLite consensus disorder prediction 1 354 - -
Trre14g04845 895 MobiDBLite consensus disorder prediction 263 278 - -
Trre14g04845 895 MobiDBLite consensus disorder prediction 333 350 - -
Trre14g04845 895 SUPERFAMILY RING/U-box 467 516 - -
Trre14g04845 895 SMART PHD_3 557 602 IPR001965 -
Trre14g04845 895 Pfam Ring finger domain 467 510 IPR001841 -
Trre14g04845 895 MobiDBLite consensus disorder prediction 59 73 - -
Trre14g04845 895 CDD RING-HC_Topors 466 513 - -
Trre14g04845 895 PANTHER F18C1.6 PROTEIN 156 717 - -
Trre14g04845 895 ProSitePatterns Zinc finger RING-type signature. 487 496 IPR017907 -
Trre14g04845 895 ProSiteProfiles Zinc finger RING-type profile. 468 510 IPR001841 -
Trre14g04845 895 MobiDBLite consensus disorder prediction 427 456 - -
Trre14g04845 895 MobiDBLite consensus disorder prediction 288 332 - -
Trre14g04845 895 Coils Coil 116 221 - -
Trre14g04845 895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 526 605 IPR013083 -
Trre14g04845 895 MobiDBLite consensus disorder prediction 661 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04845 Trre-Chr14 55604338 55607446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04845 468 513 C3H Transcription Factor Family AT2G39100 45.652 1.47e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre14g04845 PHD 2.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04845 - - psat:127132436 1023.85