Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04844 ATGGTTAAGGGAGGAAAGGTTAGTAGAAAAGGAAATTTGAGGAAAAAGGATAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTCGTTTCGGATGATGTTGGGAATGTATCTGATTGTCCGGAGGATGATTGTTTCTCTTTGGATGGATGTGCACCCGAGGATAGTTTTGATGGGTTTGTAGAAGATGAGGATGGGGAAGAGGAGGAAATTCAACCTGTGACGAAATTTAATAGATCAAGGGCTAAAACTAAAACTGGCGTAAGGAGTCGGAAGGAAAATGCAAGTAAAACCTCGCGGAAGAGACAGAGGATTACATACAAAGAACAACCTGAAGAAGAAGAAGAAGAATGGGATGAGAAAGAAGAGGAAGACGAAGTAGAAGAAGAGGAAGAAGATGATGATGATTACGATGATGTTTATGAAGAAGAAGAGGAGGAGGAGGAAGATGTAAAAGAAGACGAAGAGGAGGAGGTGGATGTAAAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGTGGAAGAAGTAAAAGAAGAAGAAAAAGAGGAGGAGAAGGAGGAGGTGGAAGAAGTAAAAGAAGAAGAAAAAGAGGAGGAGGAGGAGGAGGAAGAAGTAAAAGAAGAAGAAAAAGAAGTGGAAGAGGAGGATTTCAGTTATGAAGATGAAGAATTTATACCGACAGAAGAAGATTACACAGATGAGGACGAAGAAGAAACAAGGGGCATAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCGGCTTCTAGCAGAAGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGGCGAAAGAATGGAGGATCGAAGAGGAAAGTAGAGTGTGATGATGTAGATGATTTTTCGGATGATGGCCCAGCCATCAGAACAAATAGCAGAAATAAATCAGTCCTGAAAAGGAGAAGAGTTATCCTTGAAGATGCCAATTCCGGTTCAGATTGTGAGACTAGACAATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCTATGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGAAGAGCTTCTCTTCGAATGAAAAATGAAGTGGTTAGAGTACATGAAGATCTACACCAGCAACGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGATCTGAAAAGTGAGGTGGGAAAGCAGGTTGAATCTCGGTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGAAGAAGCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCCACTGAAGAAGAACTGAGGAGCTACATTGATCCATACGAGTCTGTTATTTGTTCAGAGTGCCATCTAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGCATGAAGTACCTGAAGGTAACTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGACAACCCAAAGCCTGCCTTCCAGACCATCACCTGTTCATGTACGAGAAAGTATCGACCTGAACTTGATATCTTCACCTCATACATCTTTTAGTCAAGGATTCGGCCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCCGAAGGAGCTTCTCCAATGTCTGGAGGCGGGGCACCGACCTTATCAGAGAGGCGCTGGATACACCGTCAAATTCAGCAGCTACGTTCAATAGATAGAATGACTACTACAAATGGCAGAATTAATGGTGTTCCAGCTACCACCAATACAGTAAGTAACTTGCATAGCTCTGAAATTGATCAAAGTAGGGAACCAAGTTCTCAACACACAAGGACACAGGATGTAGGAACATCCTATCACACATTTTTTGAGGCGAGTTTAAGCAACAATATCTCTCCATTAATGCAGAATGGAGATCCCTTCTCCATAATTATGAGCAATTCAAGAAGGCCAGTGGTTCAGGATTCAAACATCGGGCCTGTGAATTCTGTTATTTGGCCTGGAATTTTGGGGGCACACACCTTATCAGATAATGGACCAATCCACCCGTGCAGCAGCAGATCAAACATTGACATCGAGGGTAGTATGCCCCTTGCCATCAATGAAGAAGGTAACTTGCACATTGTAAAGGAGCGGTTGCAGTCGATGGTTAAAAGCCATCTGAAGAGATTGTCTCAAGATACTGATTTGGGTTATAATACTTACAAGGACATTGCAAGTAGTTCGACGCATACCATACTCGCTGCTTGTGGTCTCGAGCATAAGACGAGTGAGGTTTGTAATGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAACGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCATTTGTAGGAGATGTGGTTAAAAGGATATTGGACACAAGAATGTCTTCACAGTGGTTAAGATTAGGACTTTAG 2604 0.4274 MVKGGKVSRKGNLRKKDRSKGGGSDDSDEDYVVSDDVGNVSDCPEDDCFSLDGCAPEDSFDGFVEDEDGEEEEIQPVTKFNRSRAKTKTGVRSRKENASKTSRKRQRITYKEQPEEEEEEWDEKEEEDEVEEEEEDDDDYDDVYEEEEEEEEDVKEDEEEEVDVKEEEEEEEEEEVEEVKEEEKEEEKEEVEEVKEEEKEEEEEEEEVKEEEKEVEEEDFSYEDEEFIPTEEDYTDEDEEETRGIKKKNNGMKMGKKKALKKRVSAASSRSRKRSGSRVSKKPKRKRRRKNGGSKRKVECDDVDDFSDDGPAIRTNSRNKSVLKRRRVILEDANSGSDCETRQSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMKNEVVRVHEDLHQQRKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQVESRCPLCKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGHEVPEGNWYCDGCRPVALASLNSQAQESDLRATTQSLPSRPSPVHVRESIDLNLISSPHTSFSQGFGHLSSSRFSGRSAEGASPMSGGGAPTLSERRWIHRQIQQLRSIDRMTTTNGRINGVPATTNTVSNLHSSEIDQSREPSSQHTRTQDVGTSYHTFFEASLSNNISPLMQNGDPFSIIMSNSRRPVVQDSNIGPVNSVIWPGILGAHTLSDNGPIHPCSSRSNIDIEGSMPLAINEEGNLHIVKERLQSMVKSHLKRLSQDTDLGYNTYKDIASSSTHTILAACGLEHKTSEVCNVPPPSVCPHIELIAGGQTSMIKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04844 867 MobiDBLite consensus disorder prediction 90 114 - -
Trre14g04844 867 MobiDBLite consensus disorder prediction 1 320 - -
Trre14g04844 867 SUPERFAMILY FYVE/PHD zinc finger 456 529 IPR011011 -
Trre14g04844 867 MobiDBLite consensus disorder prediction 587 606 - -
Trre14g04844 867 SMART PHD_3 483 528 IPR001965 -
Trre14g04844 867 MobiDBLite consensus disorder prediction 294 311 - -
Trre14g04844 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 533 IPR013083 -
Trre14g04844 867 ProSiteProfiles Zinc finger PHD-type profile. 481 530 IPR019787 -
Trre14g04844 867 MobiDBLite consensus disorder prediction 115 239 - -
Trre14g04844 867 MobiDBLite consensus disorder prediction 59 73 - -
Trre14g04844 867 MobiDBLite consensus disorder prediction 249 293 - -
Trre14g04844 867 PANTHER F18C1.6 PROTEIN 153 427 - -
Trre14g04844 867 MobiDBLite consensus disorder prediction 388 420 - -
Trre14g04844 867 Pfam PHD-finger 483 529 IPR019787 -
Trre14g04844 867 Coils Coil 116 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04844 Trre-Chr14 55604338 55607446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04844 478 527 C2H2 Transcription Factor Family AT3G01460 43.137 1.38e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre14g04844 PHD 2.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04844 - - psat:127132436 971.074