Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04838 ATGGGAATCATGGATCAAATGGAGAAGGAATGTTGTTCATATGATGAAATGGGTATGATCAAGAAGTGTTGTGCTGATTGCAAAGCCACCAAGACTCCACTTTGGAGAGGAGGACCAAATGGACCCAAGACGTTGTGCAACGCTTGTGGAATTAGGTACAGAAAGAGAAGGGGTTCTTGTAATAACAAAGGACAAGAAAAGGAAAGGAAGAGAGAGAAAGCACAAAATGGGAGGAATCGTAGTAGTGATGATGATGGTGGTGGTGGCAGTGATGATGATTTGAGTGAGTGTTTGAAAATGAAGTTAGTGGCTTTGGGTGAAGAAGTTTTATTGCATTCTGTTCTGAAGAAACAAAGGAGCCAAAGGAGGATTAAATTAGGTGAAGAAGAACAAGCTGCTGTGTGTTTGATGGCACTCTCTTGTGGCTTTGTTTTTGCTTGA 441 0.415 MGIMDQMEKECCSYDEMGMIKKCCADCKATKTPLWRGGPNGPKTLCNACGIRYRKRRGSCNNKGQEKERKREKAQNGRNRSSDDDGGGGSDDDLSECLKMKLVALGEEVLLHSVLKKQRSQRRIKLGEEEQAAVCLMALSCGFVFA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04838 146 MobiDBLite consensus disorder prediction 58 92 - -
Trre14g04838 146 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Trre14g04838 146 SMART GATA_3 18 70 IPR000679 GO:0006355|GO:0043565
Trre14g04838 146 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Trre14g04838 146 CDD ZnF_GATA 24 73 IPR000679 GO:0006355|GO:0043565
Trre14g04838 146 ProSiteProfiles GATA-type zinc finger domain profile. 24 54 IPR000679 GO:0006355|GO:0043565
Trre14g04838 146 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 63 - -
Trre14g04838 146 Gene3D - 20 84 IPR013088 GO:0006355|GO:0008270
Trre14g04838 146 PANTHER OS01G0976800 PROTEIN 20 145 - -
Trre14g04838 146 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04838 Trre-Chr14 55582782 55584704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04838 5 146 C2C2-Gata Transcription Factor Family AT5G49300 46.479 2.01e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre14g04838 GATA 2.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04838 - - cam:101512290 223.787