LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g04821	ATGGTATCAGATAGGCAAAAGGAGCACAAAGGCACTGATAAAATTCCTATTCCTATTGCTATTCATGGGTCTAAATGGAATCATGGTGGTACAAAACAACCACCAATCAGTGGCCTTAGGTATGTGATTAACACTCTAAGGGCTAATGGTAACGATTCCATCTACTTGGAAAATTTCATTAGAGAAGTGGTAAGAGATGTGGTGGAAAGAAAAGTCCAAGAGCGCCAACTTTCAAGTGAAAAGGTTAATGAGGGTGGCATAATATCTGAAGCCAGATACTTAGAGTTGTGTTTTATAAATAATCATAAGTTACCTGATACAGTTTTCACTAAAACTAGCATAATATCAAAGGATGAACCTCTTCAAATTGCTCTAGTTGATGTTAGATCTAAGTCAATAGTCAATGAAGGTCCCTTCTCTTCAACAAAGATAGAGATTTGTGCACTTGATGGTGAATTTGGATCTTGTGGCAATGAGGATTGGACTCAAACTCAATTCAACGATAATATCTTGCGCGAAAGAGATGGTAAAGAGCCACTATTGGTTGGGAATCAGAGGATTATTACTCTTGAAAATGGAGTTGCTTTCATCTCTAAAATCATGTTTACCGATAATTCAAGATGGTTGAGAGGCAAAAAGTTCAGATTTGGAGTTAAAGCTATGCAAAATGGAGAAAAAATTAAGGAAGGTAGAAGTCAACCTTTTAGGGTCAAAGATAATAGAGGAGAATCCTACCAGAAACATTACCCTCCATACTTGAATCTGAACGATGATGTTTGGCGTTTGAAGAAAATTGCGAAAGAAGGAAAATTCCACAAGCGGCTCTCTTCCGAAGGAATTCACACTGTTAAGGATCTCTTGAAGTTACTCATAATCAATGAATCTTCATTACATAAGATGTTTGGCAAGATTCCGAAGAAGTCTTGGTTAGCAATTATCGAACATGCAAAGTCGTGTGTCGTGAATGATTACAAGCTTTATAGGTATCTGATAAGTGGCCAAATAATGCTTATATTCAATGCCATCTACAAACTTGTGGGGGTGACATTTGATGAACAAAATTACTATTTACCAGAGACTCTCACACCCAGCCTGAAGAATATTGTAGAAATTGGGAAGCAGAATGCTTACGAAAATGTGAATAATAATTTGGAACCAATTGATGAAGCTTTCTTGAACTCCATAAGCCTAGCAGCATGTTTAAAATCAGCAGCACAATCAGATGCTCCGGTTCAAGGTCTGCAACATATCGATATCTCTACTGGACAAGGTCAAAAAGAAACCGGACCAGGTTACGTTCAACCATGTAGCTCTACTTCATATGCTAATGAAGGAATGAATAATTGGCAAATCAATGTTCCAGTTGCACAAGACAATGAAGAAGATAATTATGAATCACAAGTTCCAGTTGCACAAGATGGTTATTCAATATTAGAGAATCTCATAAATGACATTTGGAGTTCAGAAAATGCCATTTTATTTAATCACTTTGATGGAGCAGAATGTAGCACCCATGTTAATTTCGTAAGTTCTGTTACGGATATATCAAACAATGGGAAACCAAAAGCAGTATGGCGTAAGATTTGTGCTGTTATCAAATGGGGAATATCAGTCAAAAAGATTGCAGCTGCCAAGAGGAATTATTAG	1647	0.3692	MVSDRQKEHKGTDKIPIPIAIHGSKWNHGGTKQPPISGLRYVINTLRANGNDSIYLENFIREVVRDVVERKVQERQLSSEKVNEGGIISEARYLELCFINNHKLPDTVFTKTSIISKDEPLQIALVDVRSKSIVNEGPFSSTKIEICALDGEFGSCGNEDWTQTQFNDNILRERDGKEPLLVGNQRIITLENGVAFISKIMFTDNSRWLRGKKFRFGVKAMQNGEKIKEGRSQPFRVKDNRGESYQKHYPPYLNLNDDVWRLKKIAKEGKFHKRLSSEGIHTVKDLLKLLIINESSLHKMFGKIPKKSWLAIIEHAKSCVVNDYKLYRYLISGQIMLIFNAIYKLVGVTFDEQNYYLPETLTPSLKNIVEIGKQNAYENVNNNLEPIDEAFLNSISLAACLKSAAQSDAPVQGLQHIDISTGQGQKETGPGYVQPCSSTSYANEGMNNWQINVPVAQDNEEDNYESQVPVAQDGYSILENLINDIWSSENAILFNHFDGAECSTHVNFVSSVTDISNNGKPKAVWRKICAVIKWGISVKKIAAAKRNY	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g04821	548	PANTHER	OS02G0177800 PROTEIN	55	458	IPR012416	GO:0005516
	Trre14g04821	548	Pfam	Calmodulin binding protein central domain	255	319	IPR046830	-
	Trre14g04821	548	Pfam	Calmodulin binding protein C-terminal domain	325	382	IPR046829	-
	Trre14g04821	548	Pfam	Calmodulin binding protein-like N-terminal domain	94	240	IPR046831	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g04821	Trre-Chr14	55435175	55438220	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g04821	19	419	Calmodulin-binding Proteins	AT5G26920	35.800	1.23e-68	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g04821	-		-	mtr:25499645	606.675