LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g04817	ATGGCATCAAAGAGGACATCTCAATCTCATGATGAGGATAGTACTAAGGATCTTCATGTTCCTAGTACTAGTAGTACTACTAAGAGAATCAAACATTGCAACCCAGAACAAGAGATTCAACAACAAAACCCTTTATTTCCCACTACTATGACTCGTAGTGCCACCAATCACAACAACATCATTGCCTTTTACTTTGAACCCTTAATTCGAAAAGTGATGCTAGAGGTGATTCCACCTATGCTCGACCGCTACCTAGCCCCAAGTTGTGGATTGACCTTTAACGGCCGGGCTAAGCCATACGGAAGAAGAGGTTTGCAATTGTGCTTCAAGAACAATTTGCCTCAAAAAAATTACACACAATCCAAAATCGAAGCTAAGGGAGGTGGACCACTTCGAATTGAACTGCGCGATGCTGAAAATCAACGCATAGTGAGGGATGAGGGTTCGTCGATGAAGATCCAAATCTGTGTTCTACAAGATGGAGTTGCTTACATCAACAATGTGGAGTTTACTGATATATCTAAGAGAAGAACCGAAAAATTTCAGTTAGGGGCTAAAATAGTCCGATCTAATTCAATTGGATCGGATATTAGGGAAGGTAGAAGCGAACCTTTTAGAGTCCTGGATGTTCGAGGAAAGGCTTACAAGAAACACGATCGTCCTTCAATGAATGACGAGGTATGGCGCTTGAGAGGAATAGGTAAAAATGGTAAACTTCACGCGGAGTTGCGCTTACATGGAATAAAAAGTGTTAAGGATTTGTTGCAGTTGTACAAAACCAATGAAGCTTCATTAAGAGAGAAAATAGGCAAGATTGCAGAGAAGTCATGGAACACAATTATTGCACATGTCAAAGAGTGTGAGGTAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGGAAAGAGTTAAGCAAGAAATGTCAATTGATACAACTAAACATGGTTTGGTGGAGACATCAACAGGTGTACAAACTGCACAATATGGTGGCTTAGATCAAAGTCTGCAACAATTTCACTTTCCATTTCCTCAGCAAGAAATGTGGACATCCACCTCAATCTCACAGAGTGACCAGATAGGCTCTGAATTTTATAACCAAATGTTAGCAATGGGAGACATGCAACCATACTTGTCTGGAGAGGGAAATATGATCTCTGAAGCATATAATTTTGATGGAGCATCACAAATTAGTCAATTTGGAAGTTACTCATTGGAACAAGTAAATGCAAATCATTTGCCCTTTGTTTATAGTGATGGAGCAGGACCTAGCAATCATTCCTCTTCCCTTAACTTTGCTGTGCATATATCAAGCAATGTGAAACCGAAAAAAGATTGGCGAAAGATTCGATTTGCTCTCAAATGGTTCATGCTGTATAGAACTAGAAAGAGGGACGAATTTTTGTTCATATATACTCCCTGA	1437	0.3967	MASKRTSQSHDEDSTKDLHVPSTSSTTKRIKHCNPEQEIQQQNPLFPTTMTRSATNHNNIIAFYFEPLIRKVMLEVIPPMLDRYLAPSCGLTFNGRAKPYGRRGLQLCFKNNLPQKNYTQSKIEAKGGGPLRIELRDAENQRIVRDEGSSMKIQICVLQDGVAYINNVEFTDISKRRTEKFQLGAKIVRSNSIGSDIREGRSEPFRVLDVRGKAYKKHDRPSMNDEVWRLRGIGKNGKLHAELRLHGIKSVKDLLQLYKTNEASLREKIGKIAEKSWNTIIAHVKECEVDDDDDDDDDDDDDDDDEERVKQEMSIDTTKHGLVETSTGVQTAQYGGLDQSLQQFHFPFPQQEMWTSTSISQSDQIGSEFYNQMLAMGDMQPYLSGEGNMISEAYNFDGASQISQFGSYSLEQVNANHLPFVYSDGAGPSNHSSSLNFAVHISSNVKPKKDWRKIRFALKWFMLYRTRKRDEFLFIYTP	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g04817	478	PANTHER	OS02G0177800 PROTEIN	25	159	IPR012416	GO:0005516
	Trre14g04817	478	MobiDBLite	consensus disorder prediction	288	309	-	-
	Trre14g04817	478	Pfam	Calmodulin binding protein-like N-terminal domain	158	209	IPR046831	-
	Trre14g04817	478	MobiDBLite	consensus disorder prediction	19	34	-	-
	Trre14g04817	478	Pfam	Calmodulin binding protein central domain	223	287	IPR046830	-
	Trre14g04817	478	MobiDBLite	consensus disorder prediction	288	317	-	-
	Trre14g04817	478	MobiDBLite	consensus disorder prediction	1	34	-	-
	Trre14g04817	478	MobiDBLite	consensus disorder prediction	1	18	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g04817	Trre-Chr14	55420883	55423821	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g04817	58	293	Calmodulin-binding Proteins	AT5G26920	33.453	4.57e-34	130

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g04817	-		-	tpra:123890981	534.258