Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04816 ATGCCAGCTGCAAAATTCGACCTAGGAGCCGTTCCGTTCAACCCCGACGGATGGGGCCCACTTGATTCTACCGCCGACAACACCAACGTCCCTTTCGCTCCCTTCTCTCGTTCCGACAAATTAGGTCGAATCGCCGATTGGACTCGTAACTTCAACCCGACCCGATCCAAAAACCCTGCCGATTCCGCCTTCGATTTCACCTCCGACGCTTCTTTCCCCTCTTTCGCCGACGACGACTCCTCTTTCCGTCTCGTCGACGGTAAACCCCCACCGCGCCCCAAATTCGGTCCCAAATGGCGCTTCCAACGCCAACTTCAGCTTCCTCAGCGCCGTGACGAAGAAGTCGAAGCTAAAAAACGTGAAGCCGAGAAAGAAAGAGCTCGCCGTGATCGCCATTATCAGAATCGTTCAAACCCTAGTAACCATCGCCGTGAACTTTTCAAATCATCGGTTGATATTCAACCGGAATGGAATATGCACGAACAGATCCCTTTCTCCACTTTCACAAAACTCTCATTCACCGTCTCTGAACCCGAAGATCTTCTCCTCTGCGGCGCTATCGAGAATTACGATCGAACCTACGATCGAATCAATCCCAAAAGTGAACGCCGTCTTGAGAGATTCAAGAATCGGAATTTCTTCAAAGTTACCACTACTGATGACCCTGTTATTCGTAGACTCGCTAATGAAGATAAAGCTACGGTTTTTGCTACCGATGCTATTCTCGCTACTCTTATGTGTGCTCCTAGGTCTGTTTACTCTTGGGATATTGTTGTTCAACGTGTTGGGAATAAGCTTTTCTTTGATAAGCGTGATGGGTCGCAATTGGATTTGCTTTCTGTTCATGAGACTTCTCAGGAACCATTGCCTGAAGCTAAAGAAGATATTAACTCGGCTCATTCGCTTAGCGTTGAGGCGTCTTATATTAATCAGAATTTCTCTCAGCAAGTTTTAATTAGGGATGGGAAAAAGCAGACTTTTGATGAGCCTAATCCTTTTGCTAATGAGGGTGAAGAAGTTGCTTCTGTTGGTTATAGGTATAGGAGATGGAAGCTTGATAATGATATGTATCTTGTTGCTAGGTGTGAGGTTCATAGTGTTGTTGAGCTTAATAATCAGAGGTCTTTTCTTACTTTGAATGCATTGAATGAGTTTGATCCTAAGTATACCGGTGTTGATTGGAGACAGAAGTTGGAGACACAAAGAGGTGCTGTTTTGGCTACTGAACTTAAGAACAATGCTAATAAGTTGGCTAAATGGACTGCACAGGCTCTTTTGGCAAGTGCTGATATGATGAAGTTAGGATATGTTTCTCGGATTCATCCTCGTGATCATTTTAACCATGTGATTTTGGGTGTGGTTGGATATAAACCTAAGGATTTTGCTGCACAAATTAATTTGAATCCTACCAATATGTGGGGGATTGTGAAGTCTCTTGTGGACTTGTGCATGAAATTGAATGAAGGGAAATATGTTTTTGTGAAGGATCCAACTAAGCCTCAGAGGCTGCTGCTACTGGTACCAATGATGGGGAAGATAAGAAGATTGATGATCAAGCTTAATAGGTCACATGTTTTGGGGATTGAGGACCATTCGCACCCTAGTGGTACTGATCACAAACAAAATGACCATAAGGAACCTCCGAAGCTACAGTTACGATTATGTGCTAGCGGTGGTGGTGGCATTCTTGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTAGTTGGGTTGTATTTCACAAGAGTGAAGATTGGGTCTCCTGCTAAAGAATTCTACGTTCAGATTGATACTGGAAGTGATATCTTGTGGCTTCATCTACCGTGTAGCACCTATCAGTCTGGGGATTTGGCTCGGACGGAAAAGGCGGTTGATGGAATTTTTGGGTTTGGCCCCGGTGCTTTATCTGTTATATCACAATTGTCATCACAAGGCATGACACCCAAAGTGTTCTCTCATTGCTTAAAGGGAGAGGGCAATGGAGGAGGTGTACTGGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATACTCCACTTGGCCCGCTACATTGTAGAAGAACACATATTTAG 2073 0.4443 MPAAKFDLGAVPFNPDGWGPLDSTADNTNVPFAPFSRSDKLGRIADWTRNFNPTRSKNPADSAFDFTSDASFPSFADDDSSFRLVDGKPPPRPKFGPKWRFQRQLQLPQRRDEEVEAKKREAEKERARRDRHYQNRSNPSNHRRELFKSSVDIQPEWNMHEQIPFSTFTKLSFTVSEPEDLLLCGAIENYDRTYDRINPKSERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDAILATLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKEDINSAHSLSVEASYINQNFSQQVLIRDGKKQTFDEPNPFANEGEEVASVGYRYRRWKLDNDMYLVARCEVHSVVELNNQRSFLTLNALNEFDPKYTGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILGVVGYKPKDFAAQINLNPTNMWGIVKSLVDLCMKLNEGKYVFVKDPTKPQRLLLLVPMMGKIRRLMIKLNRSHVLGIEDHSHPSGTDHKQNDHKEPPKLQLRLCASGGGGILDFSVQGTSDPYLVGLYFTRVKIGSPAKEFYVQIDTGSDILWLHLPCSTYQSGDLARTEKAVDGIFGFGPGALSVISQLSSQGMTPKVFSHCLKGEGNGGGVLVLGEILEPNIVYTPLGPLHCRRTHI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04816 690 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 7 501 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre14g04816 690 Pfam Xylanase inhibitor N-terminal 609 668 IPR032861 -
Trre14g04816 690 MobiDBLite consensus disorder prediction 105 146 - -
Trre14g04816 690 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 4 502 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre14g04816 690 MobiDBLite consensus disorder prediction 79 146 - -
Trre14g04816 690 Pfam Eukaryotic aspartyl protease 579 605 IPR033121 -
Trre14g04816 690 SUPERFAMILY Acid proteases 574 681 IPR021109 -
Trre14g04816 690 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 508 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre14g04816 690 Gene3D Acid Proteases 612 668 IPR021109 -
Trre14g04816 690 Gene3D Acid Proteases 565 611 IPR021109 -
Trre14g04816 690 ProSiteProfiles Peptidase family A1 domain profile. 579 690 IPR033121 -
Trre14g04816 690 Coils Coil 110 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04816 Trre-Chr14 55411029 55420178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04816 1 508 Eukaryotic Initiation Factors Gene Family AT4G20980 75.277 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04816 K03251 - gmx:100799613 835.099