Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04792 ATGGGCGGAGGTGGACCACCGATGATTAACACGAACGCGGAGGCGCAGTATACATCGGCGAAGACTTCGGTATGGTGGGATATAGAGAACTGTCATGTTCCTAAAGGTTCCGATCCACATGCTATTGCACAAAATATCAGTTCAGCTCTTGTTCGTATGAACTATTGTGGTCCCGTTTCCATCTCCGCCTATGGTGACACCACTCGTATTCCCGCGTCTGTACAACACGCTCTCTCTAGCACCGGAATTTCTCTCAATCATGTTCCCGCCGGTGTGAAAGATGCAAGTGATAAGAAGATCCTTGTCGACATGCTGTTTTGGGCAGTGGACAACCCTGCGCCTGCTAATTATTTATTGATTTCGGGTGATCGAGATTTTTCTAATGCCCTCCATCAACTGCGAATGAGGAGGTATAATATTCTTCTTGCGCAACCTCAAAATGCATCTGCACCCCTAGTTGCAGCTGCTAAGAGTGTATGGCTTTGGACTATTCTCTTAGCTGGAGGAGCTCCATTAGAGTCACACCAACTGGGTAATAACAGCGTCTTACCGTCTTCTGAAACTTTACAAAATCCTGTCTCAAATACTGCTCAGACACAGCAACAGGGAGGTCCCTATTCCGATGTTCATGCAGGAAATTCAAAATTCCAAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGGCGACCAACTTGGAGAAACCCGAGTCAACCAAATGGACCGAAGGCCATGAATTCACCCCCAGATGGACCTCAAGATAACCGTAATAACGTAAGCAATTATCTACCTGGCAACTATAATCCAAATGTTCCCCCAAGGGGACCCACCACAAATTTTGTCCGCGCCAATTCTGATCAGTTATGGAGCAATAATGGTAATCAACAGCGGAATCATCAAAATGGTAATCAGCAGGGAAATCATCAAAATCCTTATTCCCAGCCATCAAGACCAAATGACTTTCCATTGCAACCTCCTTTTGCACCTAGTAATTCATATTCTCCAAATTCCCATGCTTTTGCAACTACACCGGTGCCACCTAGGAGTAGTGGCCCCAATTTCAGTACAGGACCGCCTACAACTGTGCCAGATATTGGTAATCTGAACATTTCTGGTTATCCTAATAATGTTCATAACCCCCGTACTGTTCCGCAACGGAGTGGAGAGATGAAACCGAATCCTAAGAGTAGTGCTCCACTTCCGGTAAGATCAACGAATAAACAAAATGGACATATGGTGCATAGCAGTAACACACAAGGCTATCCACATGGTCCAGAATATCAACCTACACCGCCGGCAGCAATGGGTAATAATAAGCTTCCTGCTAATGGTAAGTGGGGATCTTCAGGATGTCCTAAACCTTCTGAGTACGTACAAGGTCTTATAGGGGTTGTTTTACTTGCCCTGAACTCATTAAAAAATGCAAAGATGTCCCCAACTTTGAAGAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACTGATGTTAAGAAGGCTCTGGAGAGTGCAGTGGAGCAGCAGATGGTGGTGGAACACAAAGTAGGCGACAATCTGACGTTGTATGTTGGTAAGAATGATAAACTTTGGAACTGTGTAAATCCTTTAGCTGGAAATCCTAAAGAGCACCCAAAAAAAATTTGGGTTGAAATTCAAAATTTTCTAACAACCCCTGCTGGAAGATCTGCAATAATGGGTACACAGTGCAAGTATGAAGCAGGTATTGTGATAAAGAACATGTGCCTTAAAGATCTTGCTTTGGGCGATGTCCTTCAGATATTGAACATTTTAATTCAACATAAAAAATGGATAGTTCATCAGCAGGCTGGCTGGCAACCACTCAGCCTTACTCTTCCTGGGTCAAACTCCGATTCAGGGGACACTGCTAGCACATAG 1905 0.4436 MGGGGPPMINTNAEAQYTSAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQNASAPLVAAAKSVWLWTILLAGGAPLESHQLGNNSVLPSSETLQNPVSNTAQTQQQGGPYSDVHAGNSKFQNGGRGFDSRYQGRPTWRNPSQPNGPKAMNSPPDGPQDNRNNVSNYLPGNYNPNVPPRGPTTNFVRANSDQLWSNNGNQQRNHQNGNQQGNHQNPYSQPSRPNDFPLQPPFAPSNSYSPNSHAFATTPVPPRSSGPNFSTGPPTTVPDIGNLNISGYPNNVHNPRTVPQRSGEMKPNPKSSAPLPVRSTNKQNGHMVHSSNTQGYPHGPEYQPTPPAAMGNNKLPANGKWGSSGCPKPSEYVQGLIGVVLLALNSLKNAKMSPTLKNITDSIRYGDPKHRNTDVKKALESAVEQQMVVEHKVGDNLTLYVGKNDKLWNCVNPLAGNPKEHPKKIWVEIQNFLTTPAGRSAIMGTQCKYEAGIVIKNMCLKDLALGDVLQILNILIQHKKWIVHQQAGWQPLSLTLPGSNSDSGDTAST 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04792 634 MobiDBLite consensus disorder prediction 195 414 - -
Trre14g04792 634 Pfam OST-HTH Associated domain 571 618 IPR025677 -
Trre14g04792 634 PANTHER LIMKAIN B LKAP 16 511 IPR024768 GO:0005777|GO:0010468
Trre14g04792 634 MobiDBLite consensus disorder prediction 250 317 - -
Trre14g04792 634 Gene3D - 12 163 - -
Trre14g04792 634 Pfam NYN domain 21 157 IPR021139 GO:0004540
Trre14g04792 634 MobiDBLite consensus disorder prediction 398 414 - -
Trre14g04792 634 MobiDBLite consensus disorder prediction 195 221 - -
Trre14g04792 634 CDD PIN_limkain_b1_N_like 21 145 - -
Trre14g04792 634 MobiDBLite consensus disorder prediction 330 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04792 Trre-Chr14 55223941 55226509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04792 11 215 C2H2 Transcription Factor Family AT5G61190 68.095 1.75e-83 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04792 - - gmx:100794608 977.237