Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04787 ATGGATTATCGATGGACCAAAGGTAAGCATGAATCTGGTGGTCGTGACAGGAAGCAATTCAAAAAGGATCGGGCTTATGAAGAATCGCTTATTGAGGATTTGGCTGAGGATTTTCGTTTGCCGAGAAATCAAAGACCAACAGAAAATGTTGATTTGGATAATGTTGAACAAGCTTCTCTAGATACACAAATAACTTCATCTAATATAGGTTTTAAGCTTCTTCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATAGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGATTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGAAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAAAATGTGAGGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAGATCCGGAAGGTGTTTTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCATATGATCACAATCACAGGAAGCGTTTCAAAGAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGATCAACACCGGTTTCAGTTTCCTCTGAATCTAGGACTGCTACTGCACTAACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTCTCTGCTAAAGGCACTGCTTTCAAGAGTACGGTTGGTTCAAAGAAGCCAAATGTTCCAAAGAAACCAAATGTTCCGGTGGCCTCTATATTTGGCAACGATAGCGATGAAGAGTAA 921 0.4169 MDYRWTKGKHESGGRDRKQFKKDRAYEESLIEDLAEDFRLPRNQRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGIGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKEMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSVSSESRTATALTDQEQRNTLKFGFSAKGTAFKSTVGSKKPNVPKKPNVPVASIFGNDSDEE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04787 306 MobiDBLite consensus disorder prediction 227 261 - -
Trre14g04787 306 MobiDBLite consensus disorder prediction 1 22 - -
Trre14g04787 306 MobiDBLite consensus disorder prediction 276 306 - -
Trre14g04787 306 Coils Coil 116 143 - -
Trre14g04787 306 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Trre14g04787 306 MobiDBLite consensus disorder prediction 194 261 - -
Trre14g04787 306 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Trre14g04787 306 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Trre14g04787 306 MobiDBLite consensus disorder prediction 194 222 - -
Trre14g04787 306 SUPERFAMILY beta-beta-alpha zinc fingers 142 196 IPR036236 -
Trre14g04787 306 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Trre14g04787 306 SMART G-patch_5 64 109 IPR000467 GO:0003676
Trre14g04787 306 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04787 Trre-Chr14 55201267 55204071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04787 1 306 C2H2 Transcription Factor Family AT5G26610 64.821 7.85e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04787 - - gmx:100793206 479.559