Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04786 ATGGATTATCGATGGACCAAAGGTAAGCATGAATCTGGTGGTCGTGACAGGAAGCAATTCAAAAAGGATCGGGCTTATGAAGAATCGCTTATTGAGGATTTGGCTGAGGATTTTCGTTTGCCGAGAAATCAAAGACCAACAGAAAATGTTGATTTGGATAATGTTGAACAAGCTTCTCTAGATACACAAATAACTTCATCTAATATAGGTTTTAAGCTTCTTCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATAGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGATTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGAAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAAAATGTGAGGAAGCGGGAGAAGGCAGCATATAACATATATGCATGCCTTTTTACCGGATTGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAGATCCGGAAGGTGTTTTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCATATGATCACAATCACAGGAAGCGTTTCAAAGAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGATCAACACCGGTTTCAGTTTCCTCTGAATCTAGGACTGCTACTGCACTAACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTCTCTGCTAAAGGCACTGCTTTCAAGAGTACGGTTGGTTCAAAGAAGCCAAATGTTCCAAAGAAACCAAATGTTCCGGTGGCCTCTATATTTGGCAACGATAGCGATGAAGAGTAA 963 0.4154 MDYRWTKGKHESGGRDRKQFKKDRAYEESLIEDLAEDFRLPRNQRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGIGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREKAAYNIYACLFTGLVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKEMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSVSSESRTATALTDQEQRNTLKFGFSAKGTAFKSTVGSKKPNVPKKPNVPVASIFGNDSDEE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04786 320 ProSitePatterns Zinc finger C2H2 type domain signature. 177 199 IPR013087 -
Trre14g04786 320 MobiDBLite consensus disorder prediction 1 22 - -
Trre14g04786 320 Coils Coil 116 143 - -
Trre14g04786 320 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 320 - -
Trre14g04786 320 MobiDBLite consensus disorder prediction 289 320 - -
Trre14g04786 320 SUPERFAMILY beta-beta-alpha zinc fingers 173 206 IPR036236 -
Trre14g04786 320 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Trre14g04786 320 MobiDBLite consensus disorder prediction 208 236 - -
Trre14g04786 320 MobiDBLite consensus disorder prediction 208 276 - -
Trre14g04786 320 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Trre14g04786 320 Pfam Zinc-finger double-stranded RNA-binding 175 202 IPR022755 -
Trre14g04786 320 SMART G-patch_5 64 109 IPR000467 GO:0003676
Trre14g04786 320 MobiDBLite consensus disorder prediction 241 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04786 Trre-Chr14 55201267 55204071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04786 1 320 C2H2 Transcription Factor Family AT5G26610 61.994 8.13e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04786 - - gmx:100793206 469.929