Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04779 ATGTCTAAAGAAAAAGTTGATCATAAAGAGATGAACAATTCTTCTGAACATGATCAATCTTCTGTACCCAAAAATGATTTGTTTGAGCTGGTTTTGGAAAATGGTCAGATTTCAGTGCAGGGTCAATCTAGTTCAATTTCCAATATAGGTAAAAAGAGTTCATCTTGTAAGAGTTTGCCATCTCATACTATTAGAGGTCATGGTAAAGATACAGGTAAACATGGTAATGAAACAAATACAAGGATGAAAAAGTTTGAGGATTTAGATAATGGTAATTTGAATGAAATTCTTACAAGGCCTGTTTCTTCAAATCAAGACGAAGATGTGATGATGCCTTGGTTGAATTATGCAATGGATGAACACTCTTTACAACATGACTATAATTATAGTTTCTTACATGAACTATCTGGTGGTGTGAACACAAATGACTTTGCTGCCTCAAATAAATTTTCTTTGCTTGATAGAAGAAGTAATTGTATTCAAGTATTTAGTGACTCTCATAAACAAGGGATTCTGTACAAGGGTTCTTCAGTTGCAGCTGCAACTGAAGAATTTGAGACATTTGGACTAAAAAATAGCACCAATCAGTTATACGCGGCATCACAGTTGCATCAATGCCAACCTTCACTTGAAAATGATTCAAAAAGTAATGCAAACCAGCATGATGCACCTTGTGAAGAAATCTCTCATATTCCATCTTCATCAAACATAATGAATTTCACTCATTTTGCAAAACCTGTTGCTGTTGTGAAGGCTAATCTTCACAACATTGGTTTGACTTCTTCAAGATCAGAAATTTCAGGAATAAAGAACAAAGATGAAGCTGCAATAGGTATCAGTCCTCTTGAATCAACAAAAGTTGATTTAAGTGGAGATTGTTTAAAAAATTCTGTCATACACTGTCATCATGCTGTGGAGCCATCCAGGGTTGATTTGAAATCTATGGAGCCGAAATCTCTTGAGCAAAACGCTGCTGTTTCTACGCCTGCTTGCAAAGATGTGTCCAAGTTTGATCAAACTTCCAATCAAGTTCTTGGTGAGAGTGGCAGAAAAGGTCAAGAAGGTGTTAAAAAATGTATGGAGCAAACAGTAGTCTCTTCCTCTGTTTGTTGTTCTGACAATGGCGCATATAGAGGTTCAGATGATGCAAATCAAAATTTGAAGCGAAAAAATCTAGACTCTGAGGATTCTGAGTGGAACAGTGAAGATGTTGAGGATGAATCATTTGGTGTTGTCAAAAGGACAGCTCATGGACGAGGAGGTATCGGCTCGAAGAGAAACCGTTCAGCAGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGCGCGTTGCAAGAGCTCATTCCAAATTGCAATAAGACAGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAACTGCAAATTATGTCAATGGGAGGTGGTGGTTTATACATGCCTATGATGTTACCTGCAGGAATGCAACACATGCATGCAGCACACATGTCTCCCTTTTCACCGATGAATATTGGCATGCAAATGGGGTTGGGGGTGCCTCAATTTCAAGGAACTCACCTTCCTGTTGCGCATACATCTGGACTTGCTGCTTTACATGGGATGTCTAGACCAAATCATCAAATGTTTGGGCAAAACCTTGGAACTCATCTACCAATGCCATGTGCTCCAATGTTTTCTTATCCTGGAGAGTCTGTTATGAACTCATCAGCTGTAGGATTAAATCCCAGTGGAACAGCAGGATTAATCGAAACCGTGGAATCGGTTTCAGCACCTAAGTTAATGGATCCAATGCCTAATGTGAACTCACAAGTTATGCAAAACAACAATGTCTGTAACTCAACAAATCAAATGTCTATCCAGGGTAAGGGTGAAACAAAAACTGGTGGACTCGAACAATCAAATTTGATACTTGATAGTGGTCATGCCTCGTCGATAAATGACAATGGAGCTGTTAATCCTGGTAAAGAAGACAACTTTGTGATTGATAAATCTCATGAGTAA 2040 0.3848 MSKEKVDHKEMNNSSEHDQSSVPKNDLFELVLENGQISVQGQSSSISNIGKKSSSCKSLPSHTIRGHGKDTGKHGNETNTRMKKFEDLDNGNLNEILTRPVSSNQDEDVMMPWLNYAMDEHSLQHDYNYSFLHELSGGVNTNDFAASNKFSLLDRRSNCIQVFSDSHKQGILYKGSSVAAATEEFETFGLKNSTNQLYAASQLHQCQPSLENDSKSNANQHDAPCEEISHIPSSSNIMNFTHFAKPVAVVKANLHNIGLTSSRSEISGIKNKDEAAIGISPLESTKVDLSGDCLKNSVIHCHHAVEPSRVDLKSMEPKSLEQNAAVSTPACKDVSKFDQTSNQVLGESGRKGQEGVKKCMEQTVVSSSVCCSDNGAYRGSDDANQNLKRKNLDSEDSEWNSEDVEDESFGVVKRTAHGRGGIGSKRNRSAEVHNLSERRRRDRINEKMRALQELIPNCNKTDKASMLDEAIEYLKTLQLQLQIMSMGGGGLYMPMMLPAGMQHMHAAHMSPFSPMNIGMQMGLGVPQFQGTHLPVAHTSGLAALHGMSRPNHQMFGQNLGTHLPMPCAPMFSYPGESVMNSSAVGLNPSGTAGLIETVESVSAPKLMDPMPNVNSQVMQNNNVCNSTNQMSIQGKGETKTGGLEQSNLILDSGHASSINDNGAVNPGKEDNFVIDKSHE 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04779 679 MobiDBLite consensus disorder prediction 63 78 - -
Trre14g04779 679 MobiDBLite consensus disorder prediction 1 15 - -
Trre14g04779 679 MobiDBLite consensus disorder prediction 651 679 - -
Trre14g04779 679 SMART finulus 434 483 IPR011598 GO:0046983
Trre14g04779 679 MobiDBLite consensus disorder prediction 40 78 - -
Trre14g04779 679 MobiDBLite consensus disorder prediction 1 27 - -
Trre14g04779 679 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 425 496 IPR036638 GO:0046983
Trre14g04779 679 MobiDBLite consensus disorder prediction 416 437 - -
Trre14g04779 679 Pfam Helix-loop-helix DNA-binding domain 432 478 IPR011598 GO:0046983
Trre14g04779 679 CDD bHLH_AtPIF_like 428 489 IPR047265 -
Trre14g04779 679 PANTHER TRANSCRIPTION FACTOR PIF3 1 631 IPR044273 GO:0003700|GO:0006355
Trre14g04779 679 FunFam Basic helix-loop-helix transcription factor 423 486 - -
Trre14g04779 679 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 428 477 IPR011598 GO:0046983
Trre14g04779 679 MobiDBLite consensus disorder prediction 40 61 - -
Trre14g04779 679 Gene3D - 423 485 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04779 Trre-Chr14 55125619 55129025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04779 14 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.809 7.47e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g04779 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04779 K12126 - gmx:100794974 588.186