Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04777 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTTCGTAAAGGTCTTTGGTCTCCTGAAGAAGATGAAAAGCTTTTGAATTATATCACCAAACATGGTCATGGATGTTGGAGTTCAGTTCCAAAACTAGCTGGTTTGCAAAGGTGTGGTAAGAGCTGTAGATTAAGGTGGATAAATTATCTTAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAAAATTCTATAATTGAACTTCATGCACTCCTTGGCAACAGATGGTCTCAAATTGCGGCACAGTTACCAGGAAGAACAGATAATGAGATAAAAAATTTATGGAATTCAAGTTTGAAGAAGAAGTTTAGACAAAAAGGAATTGATCCAAACACACACCAACCAATTTGTGAATTAGCTGAGATCAATGACAAGGACAAGCAATTACCTGGTGATGACAAAAGCAATATTCAGAAAACCTCTGTGGGATCCAATGAAGTGAAGAATCTTTTTGATGACACACCAATACCAACACCAAATCCAAATTCTATCCCTATGGATAACTGCAATTATCATCCACTTGAAAAATTTTCTTCAACTTCAAAAATCAACAATTGCTTCATACCTTCTTCTGATATGGTTGGATTAGGAGGTTCATATAATCTCTCTTTTCAACAACTTAACTATGGAATCAATAACATAGCTCTATCTCCAAATTCCAACAACAATAATTCACTTTGTTTCATACCAAGTACAAGTGGTTCCAATTCCACTTGCTCTCAAATGATGTCAGAACTCAATTCTTCAACCATTTACCATTCTATGTTCCAAACAGCTTCAAACACAAAACATATAAATATAAATCCTTCAAATTCTATATCCTCTGGTGATGTTGATGGGATTCAAAACTGGGAATTCAGTAACAACAACAACAACTCAAGCAAAAGCAGCAATGGAAGCAGTATTAGCAGCAATATCCAATTACAAAACAGCATTAACTTCATTGATCAAGAAAATCATCAAGTTGTAGAAGAGATTAAATGGTCTGAATATTTAAACAGTACTACACAATTTTATCAACAGAATCAAAGTACAACATTAACAGAGTCTTCTTCAATCATGTACAATGATAATGAGATTAAACAAGAAATGGGATTCATTAATAATAGAGATGAATCAATTCAATCAAGTACTAATACTACTACATGGAATCATAGTAATAGTCACCATCAGCAACATTATGAAGGTGCTAATTCAGATATATATAGCAACAAAGATCTTCAGAGATTCTCACTGGCATTTGGACAAACACTTTAG 1296 0.341 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKFRQKGIDPNTHQPICELAEINDKDKQLPGDDKSNIQKTSVGSNEVKNLFDDTPIPTPNPNSIPMDNCNYHPLEKFSSTSKINNCFIPSSDMVGLGGSYNLSFQQLNYGINNIALSPNSNNNNSLCFIPSTSGSNSTCSQMMSELNSSTIYHSMFQTASNTKHININPSNSISSGDVDGIQNWEFSNNNNNSSKSSNGSSISSNIQLQNSINFIDQENHQVVEEIKWSEYLNSTTQFYQQNQSTTLTESSSIMYNDNEIKQEMGFINNRDESIQSSTNTTTWNHSNSHHQQHYEGANSDIYSNKDLQRFSLAFGQTL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04777 431 CDD SANT 69 112 IPR001005 -
Trre14g04777 431 FunFam MYB transcription factor 68 129 - -
Trre14g04777 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre14g04777 431 Gene3D - 68 141 - -
Trre14g04777 431 SMART sant 66 114 IPR001005 -
Trre14g04777 431 SMART sant 13 63 IPR001005 -
Trre14g04777 431 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Trre14g04777 431 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g04777 431 MobiDBLite consensus disorder prediction 389 413 - -
Trre14g04777 431 CDD SANT 17 61 IPR001005 -
Trre14g04777 431 FunFam Myb transcription factor 11 67 - -
Trre14g04777 431 PANTHER MYB DOMAIN PROTEIN 55 1 343 - -
Trre14g04777 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre14g04777 431 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g04777 431 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g04777 431 Gene3D - 11 67 - -
Trre14g04777 431 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04777 Trre-Chr14 55101377 55102875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04777 1 431 MYB Transcription Factor Family AT1G09540 45.890 2.20e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g04777 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04777 K09422 - gmx:778182 401.364