Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04758 ATGGCTTCCATCACTGTAATCGGTGCTTCCTCTGCATATAAACTTCCCTCTCTCGAACCACACAAGAAAAAACAACTAACTTCCATTTCAACTTCCTCCGTTAAATTCCACTCTCTCGACTCCAACAAACCCCGCCACGTCACCAACAGTCTCCTTAGACATAACCGTCTCGCCAATTTCAACACCTCCGATAGGTTTCTTCCTTCTGCTGTAGCTACTCCAAATTCTTCATCTTCTTCACTTCTCAGTGATGAAGCATTTCAAGGTTTAGGACCTGGTTTTGACGGAGATGAACAAGACGATGATTTCCCTTCACGAACTACTTCTATTAGCTCCGATGAACTTGACATTTCTAAACTCGATTTGCCTTCGCAACTTGTGGATTCACTTCGTAAACGTGGTATTACCGAGCTTTTTCCTATTCAGAGAGCTGTGTTAGTACCTGCATTACAAGGTAGAGATATTATTGCTCGTGCAAAGACTGGAACAGGGAAAACTTTGGCTTTTGGAATTCCTATTATTAATGGCCTCGATGATGGTGAAGGTCCAGGTCCTTACAGTACCAGGAGTCTTCCTAGAGCATTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATACAAGAATCAGCGCCTTATCTCAAAACAGTTTGTGTTTATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCACGTGGTGTTGATGTGGTTGTTGGAACTCCCGGTAGGCTGATTGACCTCATCAATGGGAACACACTTAGGTTGAATGAAGTTGAGTATTTGGTACTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTCGAGGAGGATGTGGAAACCATTTTGGAAAAGCTTCCACCTAAGAGACAAAGCATGCTTTTTTCTGCAACCATGCCTACTTGGGTCAAAAAATTGGCCAGGAAATATTTGAACAATCCATTGACTATTGATTTGGTTGGCGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATCAGCCACTGCCACTTCAAAGCGAACAATTCTTTCTGATCTTATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCAGATGAAGTATCGTTGGCATTAACAAATAGTATCACTTCTGAGGCACTGCATGGCGATATATCTCAGCACCAGAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCAAATGATCCCGAGACTTTTGTACATCGTTCTGGTCGTACTGGCCGTGCAGGAAAGCTAGGTACTGCCATTCTGATGTACACAGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAAGATGTTTTGGAGGCATCTGCTGAGCAAGTTGTTGTCACACTTGATAGAGTTCATCCCGAGTCTATTGCATTTTTCACTCCAACTGCAGAGAAACTGATTGAAGAAAAAGGAACAACTGCCCTTGCAGCTGCACTGGCACAATTGAGCGGATTCTCCCAACCTCCATCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGTAAGATCAGTCACCGGGTTTCTTTCAGATGTATATTCCAAAGCTGCCGATGAAGTTGGAAAAATACATTTAATTGCGGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGGTAAAGAGTTACTTGAAAAGAACATACCACCTGGAAACACCATTTCTAAAGTCACTAAGTTACCTGCTTTGCAAGATGATGGGCCTGCAAGTGATTTCTATGGGAAGTTTTCCGATAGAGAACGAAGTAACCGCAGAGGTTCTAGAGATGGGAGAGGTTTTAGATCCTCACGGGGATGGGATGGAGGCCGAGGCCGAGGCTCTGATGATGATTTTGGTGACTCGTCTAGGAGGGGTGGCAGAAGTTATAAAAGTGGGAACAGCTGGTCCAAACCAGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACCATCAAGCAGGTCTCCGTCATCACCGAACAGAAGCTTTGATGGGGCCTGTTTTAATTGTGGGGAATCCGGGCATCGAGCAATGGATTGTCCAAGCAAGCGAGGCGGTGGTGGTGGCGGCGGTGGCTTTTTTTAA 2304 0.4384 MASITVIGASSAYKLPSLEPHKKKQLTSISTSSVKFHSLDSNKPRHVTNSLLRHNRLANFNTSDRFLPSAVATPNSSSSSLLSDEAFQGLGPGFDGDEQDDDFPSRTTSISSDELDISKLDLPSQLVDSLRKRGITELFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEGPGPYSTRSLPRALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLRLNEVEYLVLDEADQMLAVGFEEDVETILEKLPPKRQSMLFSATMPTWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMYTGSQRRTVRSLERDVGCKFEFVNAPSMEDVLEASAEQVVVTLDRVHPESIAFFTPTAEKLIEEKGTTALAAALAQLSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSVRSVTGFLSDVYSKAADEVGKIHLIADERVQGAVFDLPEDIGKELLEKNIPPGNTISKVTKLPALQDDGPASDFYGKFSDRERSNRRGSRDGRGFRSSRGWDGGRGRGSDDDFGDSSRRGGRSYKSGNSWSKPERSSRDDWLIGGRPSSRSPSSPNRSFDGACFNCGESGHRAMDCPSKRGGGGGGGGFF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04758 767 MobiDBLite consensus disorder prediction 651 696 - -
Trre14g04758 767 Pfam GUCT (NUC152) domain 543 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Trre14g04758 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 322 IPR014001 -
Trre14g04758 767 CDD DEADc 126 323 - -
Trre14g04758 767 SUPERFAMILY Retrovirus zinc finger-like domains 720 760 IPR036875 GO:0003676|GO:0008270
Trre14g04758 767 CDD SF2_C_DEAD 336 465 - -
Trre14g04758 767 SMART helicmild6 376 456 IPR001650 -
Trre14g04758 767 SMART ultradead3 134 339 IPR014001 -
Trre14g04758 767 FunFam Nucleolar RNA helicase II 344 534 - -
Trre14g04758 767 Pfam Zinc knuckle 739 755 IPR001878 GO:0003676|GO:0008270
Trre14g04758 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 477 IPR027417 -
Trre14g04758 767 Gene3D - 730 762 - -
Trre14g04758 767 MobiDBLite consensus disorder prediction 624 767 - -
Trre14g04758 767 Pfam Helicase conserved C-terminal domain 348 456 IPR001650 -
Trre14g04758 767 Gene3D - 339 540 IPR027417 -
Trre14g04758 767 MobiDBLite consensus disorder prediction 89 109 - -
Trre14g04758 767 Pfam DEAD/DEAH box helicase 139 311 IPR011545 GO:0003676|GO:0005524
Trre14g04758 767 Gene3D - 116 326 IPR027417 -
Trre14g04758 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 511 IPR001650 -
Trre14g04758 767 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 114 696 - -
Trre14g04758 767 CDD GUCT_Hera 550 630 - -
Trre14g04758 767 ProSiteProfiles Zinc finger CCHC-type profile. 740 755 IPR001878 GO:0003676|GO:0008270
Trre14g04758 767 SMART c2hcfinal6 739 755 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04758 Trre-Chr14 54958639 54963841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04758 96 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.917 4.00e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04758 - - gmx:100789516 1021.15