Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04754 ATGTCTGAGCAAAATTTCATTGGAAATAATGATCACTTACCCCAGAATGCGGTCGATGAACCCTTACCTGAGCAAGAGGTGAGAGAATTCCTTTGTCAATACTGTGACAAAAAGTTCTCTAGTACTCGAGCACTTGGAGGACACCAAAAAGCTCATAGGCGTGAGCGTCTCGTCGAAAAAATGGAAAAACAAAGGAGAAGGTGGGAGAACATGAATTCCACGCAAGGGATTACATCTCGTAATCAACCATACCCTTATCCATTTTCCAGTCATATTCACTATCAAGGGTATTTTCGTGGTGCTAACTTGCACCATCCTATTAGTGCGTGTATGAGCAATACAATGCCTTCTTGGCCTATTGGTTGTCCTTCTAGTGCCTATGGAGGGTTGCATATGCCAAATACACCCTCCACAACACCCCAATCTATGATGGAAATGTCAAGTTCATCCCTCACTGCACCACAATTTGGGATGGCTGATTTTCGAGATGGAGGTCAAAATGTTGCGTTGTTAGTTCCTCAAAGGTCAAACACTTTGGGTTTCGGGCTTTTGTCTCAAGCTAATCAAACCCCTTCAATTGTTCAGGGCGTAGAAAGAAATTTCATTGCTCAATTTGATTCTCAAACTCACCCATTGATGTCTCATACTAGTCAAATTGGAGAAGGCCCGATTCAAGAAAATCCCAATGTGTCTTCATCATCAGCGCAATCAACCTCGGGAGAACTCAACTTGAATCTCACCCTTTAA 747 0.427 MSEQNFIGNNDHLPQNAVDEPLPEQEVREFLCQYCDKKFSSTRALGGHQKAHRRERLVEKMEKQRRRWENMNSTQGITSRNQPYPYPFSSHIHYQGYFRGANLHHPISACMSNTMPSWPIGCPSSAYGGLHMPNTPSTTPQSMMEMSSSSLTAPQFGMADFRDGGQNVALLVPQRSNTLGFGLLSQANQTPSIVQGVERNFIAQFDSQTHPLMSHTSQIGEGPIQENPNVSSSSAQSTSGELNLNLTL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04754 248 Gene3D Classic Zinc Finger 17 83 - -
Trre14g04754 248 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
Trre14g04754 248 Coils Coil 51 71 - -
Trre14g04754 248 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Trre14g04754 248 MobiDBLite consensus disorder prediction 213 248 - -
Trre14g04754 248 Pfam C2H2-type zinc finger 30 55 - -
Trre14g04754 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Trre14g04754 248 PANTHER ZINC FINGER PROTEIN JAGGED 24 247 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04754 Trre-Chr14 54916377 54917123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04754 24 98 C2H2 Transcription Factor Family AT1G24625 35.955 2.91e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g04754 zf-C2H2_6 6.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04754 - - tpra:123892015 273.478