Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04745 ATGGGAAGACACTCTTGTTGTTACAAGCAAAAGCTTAGAAAAGGTCTATGGTCACCTGAAGAAGATGAAAAACTTTTGAATCATATTACTAAATATGGTCATGGATGTTGGAGTTCTGTTCCTAAACAAGCAGGTCTTCAAAGGTGTGGTAAGAGTTGTAGGCTAAGGTGGATTAATTACTTAAGACCTGATTTAAAAAGAGGTACATTTTCACAAGAAGAAGAAAATATTATCATTGAACTTCATTCAGTACTAGGAAATAGATGGTCTCAAATTGCAGCACAATTACCTGGAAGGACTGATAATGAAATAAAGAATCTTTGGAATTCTTGTTTAAAGAAGAAACTGAGACAAAAGGGTATAGATCCTGTGACTCATAAACCACTTTCTGAGGTTGAAAATGTTGAACATGAAGATGAAAAAACCAAAAGTCAAGAAAAAGTAACAGAAATATCAGAATCAGATGAAATGAATCTTCGGAGATCAGAAAGTACTTCAAAGTCAGATACATGTTCCTATGAACAAAAACAATCTTCAATTGTTCTAAAAGCTTATGCAACTGAAATGGAAGTAGAAGGTTCTTGTTCTAACTATTTGATGGGAAATTACCCTATTCATATGAGTTATTCATCATCCAATGATAATAATCTTCCAAATTCAAACTCTTCTCATTGGTTCAACCAAACAGGATCAAAACCTTTTGACATGAATTCTGAATTTATGTCTAATACTTTTTGTTACAAACCATCTTTTGATGTTCCTTCAGAAGATGTTTCTCTGTCTTCAGCTTCTTTTCCTATGAAGAACAGTATCTTATCTTCTTGGGGATTGACAGATTGTGACAGTTCTACTAAAGAGAATCAAAGTCATATTCATATGATGGAGAATCAAACAGAAGAAGAAGAAGCTAAGTGGAATGAGTATCTTCAAAATCCAATGTTAATGCTACAAAATCAAGTACCTCATGAGTCTTTATGCAATGAGATAAAGCCTGCCACAAATTTGTCTCCTGATGCTTTAGGTGACATGTTGCCACATTCAAAGCAGCAAGAATCTTCCCAATCTTATAATATACCAACTTTTGGACATGTATAG 1095 0.3361 MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENIIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENVEHEDEKTKSQEKVTEISESDEMNLRRSESTSKSDTCSYEQKQSSIVLKAYATEMEVEGSCSNYLMGNYPIHMSYSSSNDNNLPNSNSSHWFNQTGSKPFDMNSEFMSNTFCYKPSFDVPSEDVSLSSASFPMKNSILSSWGLTDCDSSTKENQSHIHMMENQTEEEEAKWNEYLQNPMLMLQNQVPHESLCNEIKPATNLSPDALGDMLPHSKQQESSQSYNIPTFGHV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04745 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g04745 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g04745 364 PANTHER MYB DOMAIN PROTEIN 55 1 295 - -
Trre14g04745 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre14g04745 364 MobiDBLite consensus disorder prediction 346 364 - -
Trre14g04745 364 Gene3D - 11 67 - -
Trre14g04745 364 MobiDBLite consensus disorder prediction 337 364 - -
Trre14g04745 364 CDD SANT 17 61 IPR001005 -
Trre14g04745 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g04745 364 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre14g04745 364 FunFam MYB transcription factor 68 141 - -
Trre14g04745 364 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre14g04745 364 MobiDBLite consensus disorder prediction 123 163 - -
Trre14g04745 364 Gene3D - 68 152 - -
Trre14g04745 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre14g04745 364 FunFam Myb transcription factor 11 67 - -
Trre14g04745 364 CDD SANT 69 109 IPR001005 -
Trre14g04745 364 SMART sant 66 114 IPR001005 -
Trre14g04745 364 SMART sant 13 63 IPR001005 -
Trre14g04745 364 MobiDBLite consensus disorder prediction 123 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04745 Trre-Chr14 54830347 54831727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04745 1 155 MYB Transcription Factor Family AT4G01680 83.439 1.64e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g04745 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04745 K09422 - gmx:100782199 442.58