Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04743 ATGGAATTACTACCAACAGTTGATGAACATTCTGAAGCTGCTAGTGCTAGCCATAACACTGCCTTTGATATTAGACAAAAGAGAAAAGCTAGTGCTATTGATTTATGTAATGATCGAGGATCTTCATCTGTATGCTCACTTGAAGCCTCAAATGATCCAAACTATGGTCTCAGAAAATTACATGAGGAAACTGATGACTCACCATATTTCAGTGATAATGAAGAAGAAAAACAAGAAAATATGATACAAGGAAAGCTAGCTCGTGAAGGAAATAGAGTCAAGAGAAGCTACAGAAATGCCAAAGTTCATAATTTATCAGAAAGGAAGAGAAGAGATAAAATCAACGAAAAAATACGTACATTGAGAGAGCTCATACCCAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATTGATTATCTTAAGAACCTCAAACTTCAGTTACATATTATGTCAATGAGTAGGGGACTTTGTATGCCATTTAATCATCTTATGATGTTACAAACACATCATATGAATATGAATGCACAACATTTAATGGGTTTGAGGCCACCACAAGTACAGTTTCCTATTCCACAACAGAGTAATGGTGGTGTCATAGAAAACAACAACAGAGTTCAGATGTTTGGTTTCTCCAATCAATTCCCAGCAGCACCTTTCATGGCTCCTATTATTGGAAACTCTTCAACTACACCATCACCAACTTGTTATGATGACATCCAGAATCAACCTGGCAGGACATGTGGTTAA 759 0.3676 MELLPTVDEHSEAASASHNTAFDIRQKRKASAIDLCNDRGSSSVCSLEASNDPNYGLRKLHEETDDSPYFSDNEEEKQENMIQGKLAREGNRVKRSYRNAKVHNLSERKRRDKINEKIRTLRELIPNCNKTDKASMLDDAIDYLKNLKLQLHIMSMSRGLCMPFNHLMMLQTHHMNMNAQHLMGLRPPQVQFPIPQQSNGGVIENNNRVQMFGFSNQFPAAPFMAPIIGNSSTTPSPTCYDDIQNQPGRTCG 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04743 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 176 IPR036638 GO:0046983
Trre14g04743 252 PANTHER TRANSCRIPTION FACTOR PIF3 40 231 IPR044273 GO:0003700|GO:0006355
Trre14g04743 252 CDD bHLH_AtPIF_like 98 160 IPR047265 -
Trre14g04743 252 Pfam Helix-loop-helix DNA-binding domain 102 147 IPR011598 GO:0046983
Trre14g04743 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
Trre14g04743 252 SMART finulus 104 153 IPR011598 GO:0046983
Trre14g04743 252 Gene3D - 94 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04743 Trre-Chr14 54821437 54822907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04743 25 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 48.227 9.35e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g04743 HLH 9.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04743 K12126 - gmx:100784724 196.823