Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04742 ATGGTGGGGTGTGAATATCAAAAAACAGGAAAAGTGAATTTCTCAAACTTTTCTGTACCTGCAGTGTTTCTCAAATCAACTCATCAAGAATTTCAAGAACAAAAGCCTAACAAATCAAGTATGGAATTACTACCAACAGTTGATGAACATTCTGAAGCTGCTAGTGCTAGCCATAACACTGCCTTTGATATTAGACAAAAGAGAAAAGCTAGTGCTATTGATTTATGTAATGATCGAGGATCTTCATCTGTATGCTCACTTGAAGCCTCAAATGATCCAAACTATGGTCTCAGAAAATTACATGAGGAAACTGATGACTCACCATATTTCAGTGATAATGAAGAAGAAAAACAAGAAAATATGATACAAGGAAAGCTAGCTCGTGAAGGAAATAGAGTCAAGAGAAGCTACAGAAATGCCAAAGTTCATAATTTATCAGAAAGGAAGAGAAGAGATAAAATCAACGAAAAAATACGTACATTGAGAGAGCTCATACCCAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATTGATTATCTTAAGAACCTCAAACTTCAGTTACATATTATGTCAATGAGTAGGGGACTTTGTATGCCATTTAATCATCTTATGATGTTACAAACACATCATATGAATATGAATGCACAACATTTAATGGGTTTGAGGCCACCACAAGTACAGTTTCCTATTCCACAACAGAGTAATGGTGGTGTCATAGAAAACAACAACAGAGTTCAGATGTTTGGTTTCTCCAATCAATTCCCAGCAGCACCTTTCATGGCTCCTATTATTGGAAACTCTTCAACTACACCATCACCAACTTGTTATGATGACATCCAGAATCAACCTGGCAGGACATGTGGTTAA 879 0.3641 MVGCEYQKTGKVNFSNFSVPAVFLKSTHQEFQEQKPNKSSMELLPTVDEHSEAASASHNTAFDIRQKRKASAIDLCNDRGSSSVCSLEASNDPNYGLRKLHEETDDSPYFSDNEEEKQENMIQGKLAREGNRVKRSYRNAKVHNLSERKRRDKINEKIRTLRELIPNCNKTDKASMLDDAIDYLKNLKLQLHIMSMSRGLCMPFNHLMMLQTHHMNMNAQHLMGLRPPQVQFPIPQQSNGGVIENNNRVQMFGFSNQFPAAPFMAPIIGNSSTTPSPTCYDDIQNQPGRTCG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04742 292 Pfam Helix-loop-helix DNA-binding domain 142 187 IPR011598 GO:0046983
Trre14g04742 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 216 IPR036638 GO:0046983
Trre14g04742 292 SMART finulus 144 193 IPR011598 GO:0046983
Trre14g04742 292 PANTHER TRANSCRIPTION FACTOR PIF3 80 271 IPR044273 GO:0003700|GO:0006355
Trre14g04742 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Trre14g04742 292 Gene3D - 134 196 IPR036638 GO:0046983
Trre14g04742 292 CDD bHLH_AtPIF_like 138 200 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04742 Trre-Chr14 54821317 54822907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04742 8 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 39.450 1.56e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g04742 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04742 K12126 - gmx:100784724 211.846