Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04741 ATGGGAAAAACCAAAAGTTCAAATTCTTCTTCATCTATTAGCAGCAACACCAATCACAATCTTTTTATTTCAACTGCATCTTCTTTCAACACACATCAACTTCCCACTGATCTTAGTCTTGGACTCACCATTTCCTCCACTCAACATTTTCATAATAGCTTATTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATATACTTGCTCATCAAAGTTACCATGAGTTAGTAAAAACTCTTGAACACATGTTTGACACTACTATTCTATGGGGAAATGAGATGGATGGAGTGCAACCAGAGAGATGCCATGTGTTAACTTATGAAGATGAAGAAGGAGATTTGGTTATGGTTGGTGATGTTCCTTTGGAGATGTTTTTATCTACTGTTAAGAGGTTGAAGATCACAAGAGTAGACACATTTGGTTGTTAG 441 0.3628 MGKTKSSNSSSSISSNTNHNLFISTASSFNTHQLPTDLSLGLTISSTQHFHNSLFVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFDTTILWGNEMDGVQPERCHVLTYEDEEGDLVMVGDVPLEMFLSTVKRLKITRVDTFGC 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04741 146 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 141 IPR003311 GO:0005634|GO:0006355
Trre14g04741 146 SUPERFAMILY CAD & PB1 domains 47 138 - -
Trre14g04741 146 ProSiteProfiles PB1 domain profile. 53 143 IPR000270 GO:0005515
Trre14g04741 146 Pfam AUX/IAA family 49 140 IPR033389 -
Trre14g04741 146 Gene3D - 48 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04741 Trre-Chr14 54807136 54807800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04741 56 142 B3 DNA Binding Superfamily AT2G46530 35.227 5.62e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre14g04741 AUX_IAA 2.5e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04741 K14484 - gmx:100783140 215.698