Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre14g04729 | ATGTCCTCTTTTCTTCTTTTCTCCTATGATTCAATTATTATGGAAAACCAACCCTTTCTTCTAACCAACCGTCAAAATTCACCCTTCACTTCTTCCAAATCCTTCAACGACTTCACCACCTTACAACCACCACCACCACCACCACCACCACCATCATCATCAGAAATTCAATCCTGCAACATCACTCCACAACAACAACAACAACAACAACAACCATTTTCAGTTTCACCTCCTAAACATAAAAAACTCAGCCGCTGTAAAACAGCACCAGCCATGTTCATTCTTTCAAACCTTAAACCACAAAACAACAACAACCAACCTCAACTTCCCAAACCACAAACAAATTCCATTATCAGACAAGGCATTTGGCTTCTCTTAATCTATCTTTCTATCGGTGTCACTATTTACTCTTTCAACACAAAAAAATTCTCTGGCATTGAAACTCACCCTGTTGTGGATGCACTTTATTTTTGTATAGTTACCATGTGTACAATTGGTTATGGAGACATAGCTCCATTAACCCCTTTTACTAAAGTTTTTGCTTGTGTTTTTGTTTTAGTTGGTTTTGGATTCATAGATATACTCTTAAGTGGACTTGTTAATTTTGTTTTGGATTTACAAGAAAACACGATTTTAACCGGCTTTCAAATGGGTGCTAGGGAAGGTTTTTCTGCTAGGGATTATATTGTTGATGTTGCAAAAGGTAGAATGAGGATTAGATTGAAGGTTGGTTTGGCTCTTGGTGTTGTGGTTTTGTGTATTGGTGTTGGGAGTTTGGTTTTGTGTTTTGTTGAGGATTTGAATTGGGTTGATTCGATTTATTTAGCGGTTATGTCTGTTACAACGGTTGGTTATGGAGATCAAGCTTTTAAGACGCTTCCGGGGAGATTGTTTGCTGCAATTTGGTTGTTGTTTTCTACTTTGATGGTTGCTAGGGCTTTTCTTTATTTGGCTGAGGCTAGAATTGATAGAAGACATAGGAGATTGGCTAAGAAGGTTTTGCATAGAGAAATTACTATTGAAGATTGGCTTGCTGCTGATATCAACAATACCGGTTTTATCAGTAAGTCAGAATATATGATCTTCAAGCTGAAAGAGATGGGAAAAATACAAGATAAAGATGTAATGGAAATTTGTGATCAATTCAGGAGGCTTGATCCTTCTAATTGTGGGCATATAACATTACCTCATCTCTTGGAGGGTAGGTCATGA | 1212 | 0.3746 | MSSFLLFSYDSIIMENQPFLLTNRQNSPFTSSKSFNDFTTLQPPPPPPPPPSSSEIQSCNITPQQQQQQQQPFSVSPPKHKKLSRCKTAPAMFILSNLKPQNNNNQPQLPKPQTNSIIRQGIWLLLIYLSIGVTIYSFNTKKFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKVFACVFVLVGFGFIDILLSGLVNFVLDLQENTILTGFQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEDLNWVDSIYLAVMSVTTVGYGDQAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKKVLHREITIEDWLAADINNTGFISKSEYMIFKLKEMGKIQDKDVMEICDQFRRLDPSNCGHITLPHLLEGRS | 403 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre14g04729 | 403 | SUPERFAMILY | Voltage-gated potassium channels | 233 | 341 | - | - | |
| Trre14g04729 | 403 | SUPERFAMILY | EF-hand | 343 | 398 | IPR011992 | - | |
| Trre14g04729 | 403 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 151 | 377 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
| Trre14g04729 | 403 | Pfam | Ion channel | 250 | 319 | IPR013099 | - | |
| Trre14g04729 | 403 | Pfam | Ion channel | 124 | 203 | IPR013099 | - | |
| Trre14g04729 | 403 | MobiDBLite | consensus disorder prediction | 31 | 81 | - | - | |
| Trre14g04729 | 403 | MobiDBLite | consensus disorder prediction | 55 | 77 | - | - | |
| Trre14g04729 | 403 | FunFam | Two-pore potassium channel 3 | 226 | 340 | - | - | |
| Trre14g04729 | 403 | ProSitePatterns | EF-hand calcium-binding domain. | 347 | 359 | IPR018247 | - | |
| Trre14g04729 | 403 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
| Trre14g04729 | 403 | SUPERFAMILY | Voltage-gated potassium channels | 117 | 203 | - | - | |
| Trre14g04729 | 403 | Gene3D | - | 104 | 213 | - | - | |
| Trre14g04729 | 403 | Gene3D | - | 227 | 346 | - | - | |
| Trre14g04729 | 403 | PRINTS | Two pore domain K+ channel signature | 160 | 188 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
| Trre14g04729 | 403 | PRINTS | Two pore domain K+ channel signature | 281 | 290 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre14g04729 | Trre-Chr14 | 54746485 | 54748873 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre14g04729 | 81 | 399 | Ion Channels | AT4G01840 | 66.769 | 4.17e-153 | 437 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre14g04729 | K05389 | - | gmx:100801488 | 564.303 |