Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04723 ATGTCAGGAAAGATAATTATATCTGTTGTTTCTCTTATCCTTGTTGTAGGTGTTGCCATCGGTGTTATTGTTACTGTTCACAAAAAAGGTGAAGATCCTGAGATTCAAACTGAACAAAGATATCTTAGAGTTATTTGCCAAAATGCAGAAGATCAAAAACTCTGCAATGAAACTCTTAGCTCTGTCCGTGGCGCCGACGCTTCAGATCCTAAGGCATACATAGCGGCTGCAGTGAAAGCAGCCACTGAAAATGTCATTAGAGCATTTAACATGAGTGATAGACTCCTTGTTGAGTACGGCGACAAGGATAGCGGCATCAAGATGGCTCTTGATGGCTGCAAAGAGATGATGGAGTTTGCTTTGGACAGTCTTGATCTCTCCACCATTGTGGTTCGTGACAACAACATTCAATCTGTTCATGCTCAAAATGCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATGAAAAAGGGGCTGAGAAGAATATTAAGGATCAATTGCATGCTCAGACTATAGACCGCATGACAAAGGTCACCGTTGTTGCTCTTAACATTGTGTCTGATTTGGCCAACATACTCCAAGAATTCGGTTTGAAATTGGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTAAGGAGATTGATAATGAGGAAGGATACCCTACATGGGTCTCTGCTACTGATCGCAAGCTTTTGGCTAAAATGCAAAGAAAAGGATGGAGATCAAAAATTACGCCTAATGTTATTGTTGCCAAGGATGGTACTGGCCAATTTAAAACCATTACGGAAGCTCTTGCTTCTTACCCTAAGGGAAACAAAGGAAGATATTTTATCTATGTTAAGGCTGGTATCTATAACGAGTCCATCATTGTCCCCAAAGCGTGCGTTAACTTGATGATGTACGGTGATGGCCCTCAAAGGACTGTTATCACCGGTTATAAGAACTATGGCAAGTTGAATATCAAGACCATGGACACTGCCACCTTTGCCAACACCGCAATTGGGTTCATTGCAAAGGCAATGACATTCGAGAACACAGCCGGTCCTGATGGTCATCAAGCTGTTGCTTTCAGAAACCACGGAGATATGTCTGCTGTGATTGGTTGCCATATCTTGGGTTACCAAGATACCTTGTACACTCAAAGCAACAGGCAATTCTACCGCAAGTGTGTTATCTCTGGTACCATCGATTTCATCTTTGGAATGTCTCCCACCGTGATCCAAAAATCTGTGATCAGAGTAAGGAAGCCCGGCAAGGATCAATCCAACACAATTACCGCAGACGGATCAGAAGATTCTAAAGACGTGAACACTGGTATTGTGATCCAGGACTGCCAGATCCTCCAAGAGGAACAATTGTTACCAATCAAATCTTACTTGGGCAGGCCATGGAAGACAAATGCAAGGACGGTCTTCATGGAATCCACCATCGGTGGCTTTATTGATCCAGAAGGATGGTCCCCTTGGAACAATACGGGTATATTTTTGAACACATGTTACTTAGCAGAGTATCGCAACACTGGACCTGGTGCCAATCTTTCCAAAAGGATCAAGTGGCCTGGTTATAAAGGTGCCATTAGCCAGGACGAGGCTATGAAATTCACCGCTGGTAAATTTCTCAGTAATGGAAAGGAACCCAACCCCATACCCGCTGCTGAATGGTTGAATGCTCTTCATGTTCCTCACTACCTTGGCTTCAAACCTTGA 1740 0.4339 MSGKIIISVVSLILVVGVAIGVIVTVHKKGEDPEIQTEQRYLRVICQNAEDQKLCNETLSSVRGADASDPKAYIAAAVKAATENVIRAFNMSDRLLVEYGDKDSGIKMALDGCKEMMEFALDSLDLSTIVVRDNNIQSVHAQNADLRNWLSAVISYKQACMEGFDDEKGAEKNIKDQLHAQTIDRMTKVTVVALNIVSDLANILQEFGLKLDLKPASRRLLSKEIDNEEGYPTWVSATDRKLLAKMQRKGWRSKITPNVIVAKDGTGQFKTITEALASYPKGNKGRYFIYVKAGIYNESIIVPKACVNLMMYGDGPQRTVITGYKNYGKLNIKTMDTATFANTAIGFIAKAMTFENTAGPDGHQAVAFRNHGDMSAVIGCHILGYQDTLYTQSNRQFYRKCVISGTIDFIFGMSPTVIQKSVIRVRKPGKDQSNTITADGSEDSKDVNTGIVIQDCQILQEEQLLPIKSYLGRPWKTNARTVFMESTIGGFIDPEGWSPWNNTGIFLNTCYLAEYRNTGPGANLSKRIKWPGYKGAISQDEAMKFTAGKFLSNGKEPNPIPAAEWLNALHVPHYLGFKP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04723 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Trre14g04723 579 FunFam Pectinesterase 4 255 577 - -
Trre14g04723 579 Pfam Plant invertase/pectin methylesterase inhibitor 43 196 IPR006501 GO:0004857
Trre14g04723 579 SMART PMEI_2 37 196 IPR006501 GO:0004857
Trre14g04723 579 NCBIfam pectinesterase inhibitor domain 32 194 IPR006501 GO:0004857
Trre14g04723 579 PANTHER PECTINESTERASE 11 567 - -
Trre14g04723 579 CDD PMEI-like_3 45 202 - -
Trre14g04723 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 198 IPR035513 -
Trre14g04723 579 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Trre14g04723 579 SUPERFAMILY Pectin lyase-like 255 555 IPR011050 -
Trre14g04723 579 Gene3D - 252 567 IPR012334 -
Trre14g04723 579 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Trre14g04723 579 Pfam Pectinesterase 258 552 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04723 Trre-Chr14 54720698 54722522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04723 4 561 Carbohydrate Esterase AT5G49180 38.957 2.76e-123 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04723 K01051 - gmx:100815015 717.227