Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04722 ATGGAAGAAGAAAATGCATTCTCTTCAGCCAAAATTTCAGTCTGGTGGGACATAGAAAACTGTCAAGTCCCCAGAAACTTCAATCCCAACACCATCGCTCAAAACATCACCTCCGCCCTCTTCAATTCCAACTTCCACGGCCCCCTCTCCATCTCCGCCTACGGCGACACCACTCGTCTCCCTCCTCACGTTCAACACGCTCTCTCTTCCACCGGCATCTCCCTCCACCACGTCCCCGCCGGTGTGAAAGATGCGAGTGATAAGAAGATTCTTGTTGATATGCTACTATGGGCGGTTGATAATCCTGCACCTGCTAATTACTTGTTGATTTCTGGTGATAGAGATTTTTCAAATGCGCTTCATCAACTTCGTATGAGAAGGTATAATGTTCTTCTTGCTCAACCTTTTTGTGCTTCTGCACCTCTCACCGCCGCCGCTAAATTTGTTTGGTCTTGGCCTGTTCTCATCGCCGGCGGTCCCCCTCGCAACAATGTTACAGATCAAAACCCTAATTTCTCTAACCAACTCATTTATCAACCTAAAGTACCAAACTCAATAGAAGAATCTGTTCAAATTCAAAAACCAGAGAGTGATGATAATAATAATAATAATAATAATAACAGTATCAATAATGATAAATCTGTTATTAACGCCGAACAATCGAAGTCGTCGAAATTGTTTCGATTCAGACCACATCAATTTTTTAAGAATAATGACACTACGATGATTCCAATTGGTACTAATCTCAAAAACAATGCTGGTTCTAATTTTGGTGATAGTCATGATTTAAATCATAATAAGCAATTAATGCTTCCAATTTCTTCTTGTGGTTATGATGAATCACCTATTTTGTCTGCAAGTGCCCCAATTGTAGCTAGAGAAGATTCTAAGTCTATAAGTAGTAGCTTAACTCCATTGCTGAAATTAGATAACAACCCTAATTGTGGTGTTGGTTGTGGTCAAGAATTTTCTGATGTGAATTTGAAGCAAAAGAATTCTAGTTTGGGTGGTGGTTCTGAACAATTGTTGGTTTCTAATGTAAGGAGAGTGAAAAGTTTGCCAACAGTATCGACTTATGAGAACTTGCAAGGACTTGTTGATGTTATTCTAAAAACATTGGAGACACTCAAGAATGAAATGGTTTTTCCAACTGAAGAAAATATAACTGATTGTATTCGTTACGGTGATCCTAAGTATCAAACAATTGATGTTAAAAAGGCTTTGGATTTTGCAATTGAGCAACAGAGGGTAGTTAAACAAAGCCATTCTAAAAAATTCCATCTGTATCGTGTTGCGAATGAGAATCTATGGAGGTGTGTCAATCCTTTAGGTGGATTGCCGAGTCATTTCCCAGAAGCAATTTGGGTTAGAACAGAGAAGTTCCTTGCTTCATCCTCAGGAAGATTGGCGATTCTGGCGTCTCGCAGCAAATATGAAGCATCTTTAATTCTAAAGAGATTGTGCCTTGAAGAGCTTGTGTTGGGTGATGTACTTACGATTTTGGAGATTATAATCACAATCAAGAAATGGATTATACCTAATCATTCTAGATGGCAGCCAATTAACATTTCAGTGACAGAGGCTAAGGGGGAGGATAACTGA 1602 0.3939 MEEENAFSSAKISVWWDIENCQVPRNFNPNTIAQNITSALFNSNFHGPLSISAYGDTTRLPPHVQHALSSTGISLHHVPAGVKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNVLLAQPFCASAPLTAAAKFVWSWPVLIAGGPPRNNVTDQNPNFSNQLIYQPKVPNSIEESVQIQKPESDDNNNNNNNNSINNDKSVINAEQSKSSKLFRFRPHQFFKNNDTTMIPIGTNLKNNAGSNFGDSHDLNHNKQLMLPISSCGYDESPILSASAPIVAREDSKSISSSLTPLLKLDNNPNCGVGCGQEFSDVNLKQKNSSLGGGSEQLLVSNVRRVKSLPTVSTYENLQGLVDVILKTLETLKNEMVFPTEENITDCIRYGDPKYQTIDVKKALDFAIEQQRVVKQSHSKKFHLYRVANENLWRCVNPLGGLPSHFPEAIWVRTEKFLASSSGRLAILASRSKYEASLILKRLCLEELVLGDVLTILEIIITIKKWIIPNHSRWQPINISVTEAKGEDN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04722 533 Gene3D - 5 152 - -
Trre14g04722 533 MobiDBLite consensus disorder prediction 187 214 - -
Trre14g04722 533 Coils Coil 359 379 - -
Trre14g04722 533 CDD PIN_limkain_b1_N_like 11 135 - -
Trre14g04722 533 Pfam NYN domain 11 150 IPR021139 GO:0004540
Trre14g04722 533 PANTHER LIMKAIN B LKAP 9 416 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04722 Trre-Chr14 54717246 54719030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04722 4 165 C2H2 Transcription Factor Family AT5G61190 69.753 4.23e-72 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04722 - - psat:127128920 625.165