Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04719 ATGTCTGAGCGAAATTTCATTGAAAATGGTGAGAACAGAAAGCTCAAGCGCAGAATGGAGGACCACACAGGGCTGAGACCTGAGAAGGAATCGAAGGTTATGTCATCAACCTCTGAATCCAATGTTGAAGATTTACTTACTCTAAGGCTTGGCATTCACACCAAGCCTTCTATTAAATCTTTGGAGATTGGTGAACATTCAAACTCGTCTCAAAATGTTGTTGTTGAACCTTTATCCCAAAGCATTAATGATGAACCTTTACATGTGAAAGAAGTGATGAAATTCCCTTGTCCTTATTGTGACAAGAAATACTCCACTTCTCAAGCACTTGGCGGACACCAAAACGCTCATAAGCTTGAGCGTGCCGTCATAAAAATGGAAAAACAAAGAAGAGAAGAGGAACTGATGTCAACCCTTAGATTTGGATCTATTCATCAACCATGCCCTTATCCATTACCAAGCCCTATTCACTATCAAGGGTATTCTTATTTAGGTAGTGCTAACTTGCACTACCCAATCAGTCACCATATGAACAATACCATGCCTTATTGGAATAGTGGTTCTTCTTCTGGCGGCTATGGAGGGTTGTTTATGCCAAATACACCCCCCACAGTACCCCAACTTGCGATGCAAATGCCAAGTTCATCCCTCACAACAACACAATTTGGGACGACTAATTTTTTTGGTGAAGGTCAAAATGATGCGTTTCCAATTCCACATAGGTCAAACACTTCGGATTTGGAACTTTTTGCTAGAGCTAATCAAACCCCTTTAACTATTGAGGCTCGTACCGGTCCTATTGGAGAAGGCCTAATTCAAACAAATCCCAATGCGTCTTCATCATCAACTCAATCAACCTCAAATGGGCTGAATTTTGATTTCACGCTTTAA 891 0.4097 MSERNFIENGENRKLKRRMEDHTGLRPEKESKVMSSTSESNVEDLLTLRLGIHTKPSIKSLEIGEHSNSSQNVVVEPLSQSINDEPLHVKEVMKFPCPYCDKKYSTSQALGGHQNAHKLERAVIKMEKQRREEELMSTLRFGSIHQPCPYPLPSPIHYQGYSYLGSANLHYPISHHMNNTMPYWNSGSSSGGYGGLFMPNTPPTVPQLAMQMPSSSLTTTQFGTTNFFGEGQNDAFPIPHRSNTSDLELFARANQTPLTIEARTGPIGEGLIQTNPNASSSSTQSTSNGLNFDFTL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04719 296 MobiDBLite consensus disorder prediction 273 296 - -
Trre14g04719 296 SUPERFAMILY beta-beta-alpha zinc fingers 94 122 IPR036236 -
Trre14g04719 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Trre14g04719 296 MobiDBLite consensus disorder prediction 1 33 - -
Trre14g04719 296 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Trre14g04719 296 Coils Coil 116 136 - -
Trre14g04719 296 Gene3D Classic Zinc Finger 67 144 - -
Trre14g04719 296 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 25 218 IPR044246 GO:0009788
Trre14g04719 296 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04719 Trre-Chr14 54708107 54708997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04719 95 165 C2H2 Transcription Factor Family AT5G57520 40.845 1.06e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g04719 zf-C2H2_6 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04719 - - tpra:123892015 272.707