Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04717 ATGGAAGCTTTTCAATTGTACGGTAATGGTGCTGCTGGTGGTGGTTCCTCTGATTTAAGGTCTATGGAGAAAAGATCAGATTGGGATTTGAATAATTGGAATTGGGATGGTCATCTTTTTATAGCTACTAGTAAATTGAATCCTGTACCGGAACCCGAACATAGACAATTTTTGCCTCTTCTTGGTGGTGGTTGTGGTGGTGGTGGTTCCTCTAACTCAAATAGTTCATCTTCTTGTTCTGAACAGTTAGATCTTGGGATTTGTCAAGGGAACAAGGAAGGTGAGAGGAAGAGGAGGGTTATTGTTGTGGAGGATGATGAACTAGGTTTGAATAAGGAAGGTGCTAGTTTAACCTTGAATCTTGCTGCTGGTAGTGGTGTTCAGGTGGCTGCTACATGGGAAGGAAATATTGGGAAGAAAAGTAGAGTGGCTGGTGGAGGTAGTTCTAGTAGAGCATTTTGTCAGGTGGAGGATTGTCGCGCAGATCTCAATAATGCGAAAGATTATCATAGACGTCATAAAGTTTGCGAGATACACTCCAAGGCTAGTAAGGCGCTTGTTGGAAATGCGATGCAGAGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAAAGAAGCTGTCGAAGACGTTTGGCTGGCCATAATAAAAGAAGGAGGAAAACAAATCAGGATGCTGTTCCTAATGGAAGTTCACCAAACAATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAAATACTTTCAAATATGCAGCCTGACAGGTCAAATCAGACCGCAGATCAGGATCTGCTTACTCATCTTTTAAGGAGTCTTGCTAATCAGAATGGTGGACAAGGGGGAAGGAACTTGTCTAACCTTTTACGGGAACCTGAGAATCTGTTGAAAGAAGGATCTTTATCTGGGAAGTCTGAGATGGTTTCTACTTTATTTACTAATGGTTCTCAAGGTTCTCCAACTGTTACAGTACAGAATCATGCAGTTTCTATTAGTGAAATTCAGCATCAAGTGGTGCATACACATGATGCTAGGGTTGCTGATCAACAAACCACATCCTCTGCAAAGCCAGGTGTTTCAAACAGCCCACCGGCTTACTCAGAAGCAAGAGACAGTACTGCTGGACAGACAAAGATGAATGATTTTGATCTGAATGACATCTATATTGACTCGGATGATGGCATAGAGGATATAGAAAGGTTGCCTGTCACTGCAAATCTTGGTACTAGTTCTCTTGATTACCCATGGATGCAACAGGATTCACATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCTCAGTCCCCCTCTAGTTCCACTGGCGAAGCTCAGAATCGCACGGATCGGATTGTTTTTAAACTCTTTGGTAAAGAACCAAGTGATTTTCCTCTTGTACTCAGAGCACAGATTCTTGATTGGTTATCCCACAGTCCAACTGATATTGAAGGCTATATACGGCCTGGTTGCATCGTTTTGACTATTTATCTGCGTCAGGCTGAGGTTGAGTGGGAGGAGCTTTGCTTAGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCGGATGATGATTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTCAATGGCCAGGTTGTCATTGATACATCCTTACCGTTCAGGAGTAACAATTATAGTAAAATTTTGAGTGTTAGTCCAATTGCTGTACCAGCATCAAAGACAGCTCAATTTTCTGTGAAGGGTATCAACCTGACTCGTCCTGCCACTAGGTTATTGTGTGCTTTAGAAGGGGATTATTTGATCTGTGAAGATACTCATGAGTCTATGGATCAATGCTCCAAGGATGAGCTTCAGTGCGTCCAATTTTCATGTTCTGTCCCTGCGATGAATGGACGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGCAGTTTTTCTCCTTTCATAGTTGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAACCTTTATTGGAATCAAGTGATACTTATCCAGATGTGGAAGGGGCTGGAAAAATTCAAGCAAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAGATAAAATCTAGGACAGTTCACTTGAATTCTAGTGCGGATCTGTTTCCATTAGATCGATTCAAATGGCTTGTGGACTTCTCTGTAGACCATGATTGGTGTGCAGTAGTTAAAAAACTATTGAACCTCATGCTTGATGGAACAGTTAGTACAGGAGACCACACATCCCTGTATCTTGCACTTTCAGAGTTGGGTCTCCTTCACAGAGCTGTGAGGAGAAATAGCAGGAAGTTGGTGGAGCTTCTGTTGAGATATGTCCCTCAAAATGTTTCAGATAAACTAGCACCTGAAGACAAGGTGCTGCTTAATGGAGAGAATAAAAACTTCTTGTTTAGACCTGATGCGGCCGGTCCTGCTGGTCTGACACCACTCCATATTGCAGCCGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTGACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAATAGTATCCGTGACAGCACGGGTTCAACACCTGAGGATTATGCACGTTTACGTGGTCATTACACTTACATTCACTTGGTGCAGAAGAAAATCAACAAGAGACAAGGAGGGCCTCATGTGGTGGTTGAAATTCCTAGCAATCTGACAATGTTTGATACAAGCCAGAAGAAAGATGAATCATCCACCACCTTTGAAATTGGAAATGCTGATGTTAGAAGTCTCCAAAAGAAGTGCAAACTTTGTGATCATAAGTTGTCGTGTAGAACTGCTGTAGGGAAGTCTTTCGCATACAGACCTGCAATGCTGTCAATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCTCTTCTGTTCAAAAGCTCGCCCGAAGTTCTGTATATATTCCAACCTTTCAGGTGGGAATCGTTGGAGTACGGAACAAGCTGA 3030 0.4277 MEAFQLYGNGAAGGGSSDLRSMEKRSDWDLNNWNWDGHLFIATSKLNPVPEPEHRQFLPLLGGGCGGGGSSNSNSSSSCSEQLDLGICQGNKEGERKRRVIVVEDDELGLNKEGASLTLNLAAGSGVQVAATWEGNIGKKSRVAGGGSSSRAFCQVEDCRADLNNAKDYHRRHKVCEIHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSSPNNDQTSSYLLISLLKILSNMQPDRSNQTADQDLLTHLLRSLANQNGGQGGRNLSNLLREPENLLKEGSLSGKSEMVSTLFTNGSQGSPTVTVQNHAVSISEIQHQVVHTHDARVADQQTTSSAKPGVSNSPPAYSEARDSTAGQTKMNDFDLNDIYIDSDDGIEDIERLPVTANLGTSSLDYPWMQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQNRTDRIVFKLFGKEPSDFPLVLRAQILDWLSHSPTDIEGYIRPGCIVLTIYLRQAEVEWEELCLDLTSSLNRLLDVSDDDFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILSVSPIAVPASKTAQFSVKGINLTRPATRLLCALEGDYLICEDTHESMDQCSKDELQCVQFSCSVPAMNGRGFIEIEDQGLSSSFSPFIVVEEDVCSEICVLEPLLESSDTYPDVEGAGKIQAKNQAMDFIHEMGWLLHRSQIKSRTVHLNSSADLFPLDRFKWLVDFSVDHDWCAVVKKLLNLMLDGTVSTGDHTSLYLALSELGLLHRAVRRNSRKLVELLLRYVPQNVSDKLAPEDKVLLNGENKNFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWNSIRDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGGPHVVVEIPSNLTMFDTSQKKDESSTTFEIGNADVRSLQKKCKLCDHKLSCRTAVGKSFAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYIFQPFRWESLEYGTS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04717 1009 SUPERFAMILY Ankyrin repeat 772 895 IPR036770 -
Trre14g04717 1009 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677|GO:0005634
Trre14g04717 1009 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Trre14g04717 1009 MobiDBLite consensus disorder prediction 217 243 - -
Trre14g04717 1009 MobiDBLite consensus disorder prediction 347 385 - -
Trre14g04717 1009 MobiDBLite consensus disorder prediction 419 456 - -
Trre14g04717 1009 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
Trre14g04717 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 894 IPR044817 GO:0003677
Trre14g04717 1009 Pfam SBP domain 154 227 IPR004333 GO:0003677
Trre14g04717 1009 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Trre14g04717 1009 Gene3D - 753 905 IPR036770 -
Trre14g04717 1009 MobiDBLite consensus disorder prediction 351 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04717 Trre-Chr14 54685950 54691228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04717 10 1009 SBP-box Gene Family AT3G60030 53.740 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre14g04717 SBP 1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04717 - - tpra:123891063 1852.03