Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04680 ATGCTGGAGATTCAGAATGAACAACCGGAGCAGCAACAAAGACTCAACAATTTCACCGTAGAACCAACAAACTCTCAATTTCCCCTCGACAACAACAACAACAATGGCATTACTACTTTCCCCAATCACGCTAACGCATTCGATTCTGGATTTCCTCCTCCTCCTCCTCCTCCTAATCCTAACTTCTCCATCCCTCCTCCTCCCCTTAATCCTAACTTCTCCATTCATCATCCTCCTCCTCCTCCTCCTCCTCGCAAACGACCATGGGGTGCTCCTTCAGTTCCAGATCAAGTGGATGCTACGGGTCATGTCAAAGTTTACGTTGCACCAGTTCCAAGAACAGCATCTGAGTCTGATGTCCGCCTTGTGTTCGAAGGATATGGAACTATTGTTGAGGTTGTTCTTTTAAGGGATAAGAAAACCGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTCAATGAAGCTGACATGGCTATTAAGGCCTTAAGCAATCAGTACACTTTTCCTGGAGAATCATTTCCCGTTGTTGTCAGATTTGCTGATCGAGACCGTGAACGTTTTGGGCTTCGAGGCTTCTGCCGAAACATGGAAAAGAAAGATCCTACGGAAGTGGTGGATAAAGTTTTTGTTGGTAACATCAACAAAGAAACTTCAAGACAGGAAATTGAAGAAATATTTTCCCCTTACGGTCATATAGAAGATGTCGTCATCTTGCCGAATCGTGGATATTGTTTTGTCAAATTTTCTAGTAAAGAGATGGCATTGGCAGCAATCAAAGGGTTGAATAGAACATTCACGATGAGAGGTTGTGATCAACCAGTAATTGTTCGTTTTGCAGAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGAAACTACTTACCTGCAAACGCAAATTATGGTCCCAATTCTCAAGAACCAGCAGTTTGGCCACTGCCAAATTTTTGTGATCCCAGTAATGGAGGTAGTATTATGCATAATGGTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCAAACTGGGAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACATGCACATTCACATTTGGCTTCAATGCCTTTGCGGCCAATTCAAGCTCCCACCTTGCCTTATCAACCGTTTAATACCGAGGTGCAAAGACAATTTCATCCAGCAGATTTGCTGGTCCGAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAACGTAACAATACAGTTGCTGGAAGTACCACATCTGATCTGTCTACAGATCCCCAAGACGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGATGGTAACAAGTACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCTGAGGAGTATGCTTTGTATGACAAAGAATCACAGAAGCAACATGAGCAAGATGATTCTAGCTTTCTCCAACCGCAATTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAGGCAACAGGAAACAAATCATGATCACATGGAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1584 0.435 MLEIQNEQPEQQQRLNNFTVEPTNSQFPLDNNNNNGITTFPNHANAFDSGFPPPPPPPNPNFSIPPPPLNPNFSIHHPPPPPPPRKRPWGAPSVPDQVDATGHVKVYVAPVPRTASESDVRLVFEGYGTIVEVVLLRDKKTGARQGSCLVKYSTFNEADMAIKALSNQYTFPGESFPVVVRFADRDRERFGLRGFCRNMEKKDPTEVVDKVFVGNINKETSRQEIEEIFSPYGHIEDVVILPNRGYCFVKFSSKEMALAAIKGLNRTFTMRGCDQPVIVRFAEPKKPKMGESRGNYLPANANYGPNSQEPAVWPLPNFCDPSNGGSIMHNGPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHAHSHLASMPLRPIQAPTLPYQPFNTEVQRQFHPADLLVRNIEQQLSSQLPTQTERNNTVAGSTTSDLSTDPQDEDFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEEYALYDKESQKQHEQDDSSFLQPQLSLSSSQEVSQRQQETNHDHMESETSPVVEQV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04680 527 Gene3D - 426 491 - -
Trre14g04680 527 ProSitePatterns WW/rsp5/WWP domain signature. 445 470 IPR001202 GO:0005515
Trre14g04680 527 PANTHER RNA BINDING PROTEIN 62 506 - -
Trre14g04680 527 MobiDBLite consensus disorder prediction 48 90 - -
Trre14g04680 527 MobiDBLite consensus disorder prediction 1 93 - -
Trre14g04680 527 SMART rrm1_1 105 181 IPR000504 GO:0003723
Trre14g04680 527 SMART rrm1_1 210 280 IPR000504 GO:0003723
Trre14g04680 527 MobiDBLite consensus disorder prediction 411 434 - -
Trre14g04680 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
Trre14g04680 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 269 IPR000504 GO:0003723
Trre14g04680 527 Gene3D - 96 190 IPR012677 -
Trre14g04680 527 Gene3D - 197 291 IPR012677 -
Trre14g04680 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 185 IPR000504 GO:0003723
Trre14g04680 527 MobiDBLite consensus disorder prediction 411 443 - -
Trre14g04680 527 SUPERFAMILY RNA-binding domain, RBD 210 304 IPR035979 GO:0003676
Trre14g04680 527 CDD WW 443 472 IPR001202 GO:0005515
Trre14g04680 527 ProSiteProfiles WW/rsp5/WWP domain profile. 445 472 IPR001202 GO:0005515
Trre14g04680 527 Pfam WW domain 443 470 IPR001202 GO:0005515
Trre14g04680 527 MobiDBLite consensus disorder prediction 478 527 - -
Trre14g04680 527 SUPERFAMILY WW domain 444 475 IPR036020 GO:0005515
Trre14g04680 527 SMART ww_5 440 472 IPR001202 GO:0005515
Trre14g04680 527 MobiDBLite consensus disorder prediction 1 45 - -
Trre14g04680 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 284 IPR000504 GO:0003723
Trre14g04680 527 MobiDBLite consensus disorder prediction 487 507 - -
Trre14g04680 527 SUPERFAMILY RNA-binding domain, RBD 78 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04680 Trre-Chr14 54438263 54444893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04680 106 398 Eukaryotic Initiation Factors Gene Family AT1G71770 23.746 3.68e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04680 K13207 - gmx:100776162 625.935