Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04679 ATGCTGGAGATTCAGAATGAACAACCGGAGCAGCAACAAAGACTCAACAATTTCACCGTAGAACCAACAAACTCTCAATTTCCCCTCGACAACAACAACAACAATGGCATTACTACTTTCCCCAATCACGCTAACGCATTCGATTCTGGATTTCCTCCTCCTCCTCCTCCTCCTAATCCTAACTTCTCCATCCCTCCTCCTCCCCTTAATCCTAACTTCTCCATTCATCATCCTCCTCCTCCTCCTCCTCCTCGCAAACGACCATGGGGTGCTCCTTCAGATCAAGTGGATGCTACGGGTCATGTCAAAGTTTACGTTGCACCAGTTCCAAGAACAGCATCTGAGTCTGATGTCCGCCTTGTGTTCGAAGGATATGGAACTATTGTTGAGGTTGTTCTTTTAAGGGATAAGAAAACCGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTCAATGAAGCTGACATGGCTATTAAGGCCTTAAGCAATCAGTACACTTTTCCTGGAGAATCATTTCCCGTTGTTGTCAGATTTGCTGATCGAGACCGTGAACGTTTTGGGCTTCGAGGCTTCTGCCGAAACATGGAAAAGAAAGATCCTACGGAAGTGGTGGATAAAGTTTTTGTTGGTAACATCAACAAAGAAACTTCAAGACAGGAAATTGAAGAAATATTTTCCCCTTACGGTCATATAGAAGATGTCGTCATCTTGCCGAATCGTGGATATTGTTTTGTCAAATTTTCTAGTAAAGAGATGGCATTGGCAGCAATCAAAGGGTTGAATAGAACATTCACGATGAGAGGTTGTGATCAACCAGTAATTGTTCGTTTTGCAGAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGAAACTACTTACCTGCAAACGCAAATTATGGTCCCAATTCTCAAGAACCAGCAGTTTGGCCACTGCCAAATTTTTGTGATCCCAGTAATGGAGGTAGTATTATGCATAATGGTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCAAACTGGGAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACATGCACATTCACATTTGGCTTCAATGCCTTTGCGGCCAATTCAAGCTCCCACCTTGCCTTATCAACCGTTTAATACCGAGGTGCAAAGACAATTTCATCCAGCAGATTTGCTGGTCCGAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAACGTAACAATACAGTTGCTGGAAGTACCACATCTGATCTGTCTACAGATCCCCAAGACGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGATGGTAACAAGTACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCTGAGGAGTATGCTTTGTATGACAAAGAATCACAGAAGCAACATGAGCAAGATGATTCTAGCTTTCTCCAACCGCAATTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAGGCAACAGGAAACAAATCATGATCACATGGAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1578 0.4347 MLEIQNEQPEQQQRLNNFTVEPTNSQFPLDNNNNNGITTFPNHANAFDSGFPPPPPPPNPNFSIPPPPLNPNFSIHHPPPPPPPRKRPWGAPSDQVDATGHVKVYVAPVPRTASESDVRLVFEGYGTIVEVVLLRDKKTGARQGSCLVKYSTFNEADMAIKALSNQYTFPGESFPVVVRFADRDRERFGLRGFCRNMEKKDPTEVVDKVFVGNINKETSRQEIEEIFSPYGHIEDVVILPNRGYCFVKFSSKEMALAAIKGLNRTFTMRGCDQPVIVRFAEPKKPKMGESRGNYLPANANYGPNSQEPAVWPLPNFCDPSNGGSIMHNGPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHAHSHLASMPLRPIQAPTLPYQPFNTEVQRQFHPADLLVRNIEQQLSSQLPTQTERNNTVAGSTTSDLSTDPQDEDFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEEYALYDKESQKQHEQDDSSFLQPQLSLSSSQEVSQRQQETNHDHMESETSPVVEQV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04679 525 SMART ww_5 438 470 IPR001202 GO:0005515
Trre14g04679 525 PANTHER RNA BINDING PROTEIN 62 504 - -
Trre14g04679 525 MobiDBLite consensus disorder prediction 409 441 - -
Trre14g04679 525 CDD WW 441 470 IPR001202 GO:0005515
Trre14g04679 525 MobiDBLite consensus disorder prediction 476 525 - -
Trre14g04679 525 MobiDBLite consensus disorder prediction 1 93 - -
Trre14g04679 525 SUPERFAMILY WW domain 442 473 IPR036020 GO:0005515
Trre14g04679 525 Gene3D - 93 188 IPR012677 -
Trre14g04679 525 MobiDBLite consensus disorder prediction 485 505 - -
Trre14g04679 525 Gene3D - 424 489 - -
Trre14g04679 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 267 IPR000504 GO:0003723
Trre14g04679 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 171 IPR000504 GO:0003723
Trre14g04679 525 ProSitePatterns WW/rsp5/WWP domain signature. 443 468 IPR001202 GO:0005515
Trre14g04679 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 282 IPR000504 GO:0003723
Trre14g04679 525 Pfam WW domain 441 468 IPR001202 GO:0005515
Trre14g04679 525 SUPERFAMILY RNA-binding domain, RBD 74 191 IPR035979 GO:0003676
Trre14g04679 525 Gene3D - 195 289 IPR012677 -
Trre14g04679 525 ProSiteProfiles WW/rsp5/WWP domain profile. 443 470 IPR001202 GO:0005515
Trre14g04679 525 MobiDBLite consensus disorder prediction 1 45 - -
Trre14g04679 525 MobiDBLite consensus disorder prediction 409 432 - -
Trre14g04679 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 183 IPR000504 GO:0003723
Trre14g04679 525 SUPERFAMILY RNA-binding domain, RBD 208 302 IPR035979 GO:0003676
Trre14g04679 525 SMART rrm1_1 103 179 IPR000504 GO:0003723
Trre14g04679 525 SMART rrm1_1 208 278 IPR000504 GO:0003723
Trre14g04679 525 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04679 Trre-Chr14 54438263 54444893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04679 104 396 Eukaryotic Initiation Factors Gene Family AT1G71770 23.746 3.44e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04679 K13207 - gmx:100776162 625.935