Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04675 ATGAAAGCAGACAGAAAGGCTTCACCAACAGCAACCACCACTGCCATGATCTGGATCGAGAAGATAAGCAATGCAGTTATGAGTAGTTCAATTCAGATATTGATTTGTAATAGCTCAACTGTTGGAATTAATAAGAGGGGCAGGGTTCTGCCATCTTCAAGACAACCACCTCTAAAGGTGAGGAAGAAGTTAAGTGATATAATAACAGACCTGCACCAGCTAGTTGCCCCATTTGGAAAGACTGATACAACCTCAGTATTGTATGAAGCCATTGGATACATCAAGTTTCTTTATAGTCATGTTGAGGTGCGTGTTAACAGGCATTCCAAAACTTGTTTGATAGGACCAAACTGCCCATGGAGGACTTAA 369 0.4119 MKADRKASPTATTTAMIWIEKISNAVMSSSIQILICNSSTVGINKRGRVLPSSRQPPLKVRKKLSDIITDLHQLVAPFGKTDTTSVLYEAIGYIKFLYSHVEVRVNRHSKTCLIGPNCPWRT 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04675 122 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 105 IPR036638 GO:0046983
Trre14g04675 122 CDD bHLH_AtbHLH_like 61 103 IPR045239 -
Trre14g04675 122 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Trre14g04675 122 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04675 Trre-Chr14 54395695 54397566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04675 36 103 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 61.111 1.44e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04675 - - gmx:100783401 90.5077