Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04672 ATGTCAAAAAGGAAGTTCGGATTCGAAGGTTTTGGCATAAACCGTCAATCCACCTACAGTTTCGAACGATCTGAAGCTCCTCAACGACTCTACGTTCCTCCTTCATCACGTAAAAGCCACGACAACTACGAAGACAATGACCTCGACAACATCGAGTTCGATGATGATGCCAACGAAGAATCAAACAACAATAGTAACACCGACAAAGGTGGTGAGGAAGAGGAAATCGATCCATTAGATGCTTTTATGGAAGGGATACACGAGGAGATGAAGGCGGCACCGCCTCCGAAGCCGAAGGAGAAAGTAGATGATAGATATAAAGATGATGAAGAGGATCATATGGAGAGCTTTTTGAGGGCGAAAAAGGATTTAGGGTTGACGTTAGCGTCGGATGCACTTCATGCTGGGTATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTTGATGCTGGTTTGATTGATTATGATTCTGATGATAACCCTATTGTTCTTGATAAGAAGAAAATTGAACCTATAGCTCCTCTTGATCACACTGAAATTGATTATGAACCTTTTACTAAGGATTTTTATGAGGAGACACCTTCAATTTCAGGTATGAGTGAGCAAGATGTAACTGAATATAGGAAGAGTTTGGCTATTCGGGTATCTGGTTTTGATTGTCCTAAGCCAGTAAAAACATTTGAGGATTGTGGGTTTGCTTCACAAATTATGTCTGCTATAAAAAAACAAGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGTATAGCGAAAACTGGTTCCGGTAAAACTGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAAGAGGAAGGTCCTATAGGAGTGATATGTGCACCTACCAGAGAATTAGCACATCAGATATATCTTGAGGCGAAGAAATTTGCAAAAGCGTATGGTATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTGAAAGCAGGCTGTGAGATAGTTGTTGCTACACCCGGGAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGCAAAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCTATTGTCGGTCAGATTAGGCCGGACCGCCAAACTTTGCTCTTTTCTGCAACAATGCCTCACAAAGTAGAGAAGTTAGCCAGGGAAATCCTTTCCGATCCTATCAGAGTGACCGTGGGAGAGGTGGGGACGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCGACCGATTCTGAGAAGTTGCCATGGCTTCTGGAGAAACTGCCCGAAACGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAATCGCAATTAAGTCAGAGAGGTTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAATCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCACCTACCATGTGCTTATTGCAACTGATGTCGCTGCTCGTGGTCTTGACATAAAGTCGATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGCGCCGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGAGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCCCAGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAGGGAGGAGGTGGGAGGAAAGGCAAAGGCAGGGGTGGGGGTGCGGGTGGCAAAGGCGTGCGTGGAGTGGATTTTGGCTTGGGGATTGGATATTCTACAGAGCCAAACAATCCATCATCTAACACAGTTCCAACTCGATCCGCTGCTGTTAATTCTCTGCGAACAGGAATGATGTCCCAATTTCGGAGCAGCTTTGTTGCTGCATCATCAACCTCCCAAAATGAAGGATTCAGTAATACTACAAGTGTGGCTGTTAATAAGAGACCAACACTCGCTGGCTTTGTATCTGGTGGATCAATTGGTGGCGATATAAATACTCATCAGCAAACTGCTTCATACAACAATCCTGCTACATCAGCCGCAAATTCCACTAGTCAAAGTTCTGGAGTAAATCCTGGTCAGAACAGCACAAACAGCAATTCTAAACCTAGAGAAAGGCGGAGACCATCAGGTTGGGATAGATAG 2325 0.4323 MSKRKFGFEGFGINRQSTYSFERSEAPQRLYVPPSSRKSHDNYEDNDLDNIEFDDDANEESNNNSNTDKGGEEEEIDPLDAFMEGIHEEMKAAPPPKPKEKVDDRYKDDEEDHMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYEPFTKDFYEETPSISGMSEQDVTEYRKSLAIRVSGFDCPKPVKTFEDCGFASQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMQRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPHKVEKLAREILSDPIRVTVGEVGTANEDITQVVQVIPTDSEKLPWLLEKLPETIDQGDTLVFASKKATVDEIESQLSQRGFKVAALHGDKDQSSRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSPELMDLAMKDGRFRSKRDARKGGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSTEPNNPSSNTVPTRSAAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNTTSVAVNKRPTLAGFVSGGSIGGDINTHQQTASYNNPATSAANSTSQSSGVNPGQNSTNSNSKPRERRRPSGWDR 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04672 774 MobiDBLite consensus disorder prediction 723 760 - -
Trre14g04672 774 SMART ultradead3 246 448 IPR014001 -
Trre14g04672 774 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 379 387 IPR000629 -
Trre14g04672 774 MobiDBLite consensus disorder prediction 611 639 - -
Trre14g04672 774 Gene3D - 435 611 IPR027417 -
Trre14g04672 774 CDD SF2_C_DEAD 445 577 - -
Trre14g04672 774 Gene3D - 190 434 IPR027417 -
Trre14g04672 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 607 IPR027417 -
Trre14g04672 774 Pfam Helicase conserved C-terminal domain 460 567 IPR001650 -
Trre14g04672 774 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 433 IPR014001 -
Trre14g04672 774 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 227 255 IPR014014 GO:0003724
Trre14g04672 774 Pfam DEAD/DEAH box helicase 251 422 IPR011545 GO:0003676|GO:0005524
Trre14g04672 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 436 IPR027417 -
Trre14g04672 774 MobiDBLite consensus disorder prediction 723 774 - -
Trre14g04672 774 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 182 607 - -
Trre14g04672 774 MobiDBLite consensus disorder prediction 47 61 - -
Trre14g04672 774 FunFam probable ATP-dependent RNA helicase DDX17 189 436 - -
Trre14g04672 774 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 607 IPR001650 -
Trre14g04672 774 CDD DEADc_DDX42 238 434 - -
Trre14g04672 774 SMART helicmild6 486 567 IPR001650 -
Trre14g04672 774 MobiDBLite consensus disorder prediction 16 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04672 Trre-Chr14 54359047 54362777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04672 227 583 Eukaryotic Initiation Factors Gene Family AT3G13920 35.833 8.93e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04672 K12835 - gmx:100814854 1258.43