Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04667 ATGGATAGTTCAAATAATATGGTGGATTCTGGTGGTATTCTTCATGAAATTATAGAAGTTGACAAGTTTAAAGATGATGGTGTCGGCGTCGCATGTTGGGAGCCTGCAATGGATATGTGTTTTTCTTCGATGGATGATGCTAAATCTTTTTATGGAGAGTATGCTATGAGAAAGGGGTTTGGGTGGAAGATTAGAACATCAAAAAAAGGACAAGATGGAAAAATATGCTACATTATACTAGCATGCACAAGAGAGGGGTCTAAAGTCTCAAAGGTTCCACCTACATTGAAGACACTTCCAACAAGGATGAACTGTTGTCCGGCTAAGATTTCTATTAAGATGGAAAAGAATGGATTGTGGTACTTCAAAAAATTTAATCCCGACCATTCTCACGAGATCATCCCTACAAAGGCAAGGTTGTTCAAGGCTAACAAGAAAATGAAGAGGACTATTGAAATCAATGATGATGCGGGTGAGCATGAAAATATATTGTTTTGTGAAAGAGATGTGAAGAGTTATGTTAACCAGGAACGTCGTGCAATTGGAAAAGAAGGTGATAGCAAGGCTATGATGAACTATTTTTGTGAAATGAGGGAAAGAAATTCAAATTTCTTCTACGACATAGATTTAGATGATGATTTTCATGTAAAAAATGTGTTTTGGGCTGATGGAAGAAGTAGAGCTGCTTATGAGTATTTCGGAGATGTTGTAACTTTCGACACAACATACTTGACCAATAAATATGACATGCCTTTTGTTGTGTTTGTCGGTGTGAATCACCATGGTCAATCAACATTACTTGGATGCGGGCTGCTTTCAGGAGAAGACACAGAATCATTTGTATGGCTATTCAAGTCATGGCTTCGTTGTATGCTAGGAAAGGCCCCCATTGGTATTGTAACTGACCAATGTAAGGCTATACAAAGTGCCATTGAGTTAGTATTTCCTACAACACGCCATAGGTGGTGTTTGTGGCATATAATGAAAAAAATTCCTAAAAAGCTCAATGGATGCAGTGAGTATAAAAATATCAAGGATGCTATGGAAGAAGCGGTTTATGATACATACACAACAACTGCTTTTGAAGAGAAATGGTATTCCTTCATTGACAAATTTGAGCTTCAGCAAAACAATTGGTTGAGTGAGTTGTATAGTGAGCGTCATAGATGGGCACCAGCCTTGTTAAGGAAATATTTTTGGGCGGGTTTGTCAACTATGCAACGAAGTGAGAGCATACGAGCTTTCTTTGATGGATATATCAATTCAACGACAAGTTTAAGTCAATTTGTGAAGAAATATGATAATGCCCTTATAAGTCGGGTAGAAAAAGAATTCGAAGCAGATTTTAATTCCATGGACACTACAATTCCGTGTGGGTCAACCTCGTCCATTGAAAAGCAATTCCAAGGTGAGTACACTCATGCCAAATTCAAGGAACTTCAAGTTGAATTTAGATCCAAAATGAATTGTGTTGCCTCATTGAATATTGTGGAGGGTTGCCTTGCTACTTATCATGTGTTGGAGGATGTGGTGATTGGAGACAGAACGAAAGAAAATGTCTTCAAAGTTGCATTTAATAAGGAAAATCATGAATTCGGTTGTGAATGTTCGTTGTTTGAGTTTAGAGGTATTTTGTGTCGCCATGTGTTATCTGTGTGTGCTCATGAAAGGATTATAAATGTGCCAAAGAAGTATATTTTAACAAGATGGAAGAAAAATATCAAGAGAAAGCATTCATATATTAAGAACAGTTATAGTGTGGCAGAATTGAACCCACAAATAGAGAGATTTGACAAATTGTACAAGCATTTCTATAATGTTGTTGAAGTAGCTGCTGAGTCCGAAGTTGTAACTAAGGCACTCCATGAAACATTAAATCAGTTTAATTCTAATTTGCCACATTTGATGGAGGTGTAA 1917 0.3709 MDSSNNMVDSGGILHEIIEVDKFKDDGVGVACWEPAMDMCFSSMDDAKSFYGEYAMRKGFGWKIRTSKKGQDGKICYIILACTREGSKVSKVPPTLKTLPTRMNCCPAKISIKMEKNGLWYFKKFNPDHSHEIIPTKARLFKANKKMKRTIEINDDAGEHENILFCERDVKSYVNQERRAIGKEGDSKAMMNYFCEMRERNSNFFYDIDLDDDFHVKNVFWADGRSRAAYEYFGDVVTFDTTYLTNKYDMPFVVFVGVNHHGQSTLLGCGLLSGEDTESFVWLFKSWLRCMLGKAPIGIVTDQCKAIQSAIELVFPTTRHRWCLWHIMKKIPKKLNGCSEYKNIKDAMEEAVYDTYTTTAFEEKWYSFIDKFELQQNNWLSELYSERHRWAPALLRKYFWAGLSTMQRSESIRAFFDGYINSTTSLSQFVKKYDNALISRVEKEFEADFNSMDTTIPCGSTSSIEKQFQGEYTHAKFKELQVEFRSKMNCVASLNIVEGCLATYHVLEDVVIGDRTKENVFKVAFNKENHEFGCECSLFEFRGILCRHVLSVCAHERIINVPKKYILTRWKKNIKRKHSYIKNSYSVAELNPQIERFDKLYKHFYNVVEVAAESEVVTKALHETLNQFNSNLPHLMEV 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04667 638 Pfam SWIM zinc finger 534 554 IPR007527 GO:0008270
Trre14g04667 638 ProSiteProfiles Zinc finger SWIM-type profile. 521 557 IPR007527 GO:0008270
Trre14g04667 638 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 627 IPR031052 GO:0006355
Trre14g04667 638 Pfam MULE transposase domain 236 330 IPR018289 -
Trre14g04667 638 Pfam FAR1 DNA-binding domain 49 134 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04667 Trre-Chr14 54319586 54321502 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre14g04667 MULE 1.1e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04667 - - mtr:112421975 977.622