Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04662 ATGGTCTCAAATTCCCCAGGCTCTGCCTTTGGATCTCAAGAGAAACATGGAGGGGGATCATCAAACACTCGTCAAACTTTGGGGAACAAGTTAAATCTGTTGAAAAAGCAAATCCAAAAGGAACGAATTGAATCAATTAAAGAAAAGATTCAGAGAAATGGGAAGAATCTCAAATGTCAACTTTCTGAGGTCATGTTAGTTATATCAAGAAACGAATCATTACAAAGTGCGGAAAATACTCTTAATATGCTTTCTTCAAGAATGAATCGTCCTCAGCGTAAGTTCAATGGTTGCATCTCTCGAGTTTCGGTAGAAGGTGACCGAATCAACAATCCAGATGCATCATTAGTGATAAGTGTAAAGATGGTATACATCAAAAGATTGCCTCCATTTACATTTTGGACAAATTTAACCAGAAATGAATTAATGACTGAAGATCAATCTGTTTTTAGAACACGATATATAAATTATGATCATCATGGAGGTGAAACATTAATAACCGGTATCAGTGATACCGAGGAAGAGCCAGAAGAGCCAAAAGAGCATAAGAAAGTTAAACGCGACTTTTCTGAAGGTGAAGACAGATTTCTAAGGATGGTATTTGAAGAACATGATTTAACTGAGGAGGTTTTGAGCATTGTTAGCGATATTATCGGGGGTACCAGTTCAGAAATTAAGGAGAGGTATGAACATATCAAGGATAAGGAACGAAATTCTAAAGATTGCGGAGAAAGTGGATCTCACACTGAGATACGTTTGAACAAAAGTTTGAGCGTAACTTTAGATGGTTTTGACCACCTTTTATGTCGCCAGTGCATGATCTTTGATTGTTCTGTGCACGGATGCTCTCAAAAGTTTATATATCCAAATGAAAAGCAAAATGTTTGGTCAGAACCAGAAGGTGACAGAAAACCATGCGGTGATTATTGTCACCTTAATAATAAAGATGCTACGATTAGTGATTCTATGAGGGACCTAAATTTGGATGCTGCTTGCAATGAAGAACAACATGTAATGGATGAAACAGAATTGAATCAAATGTCTAACTCAATGGAAGGACAAATTGAGGAGGATTCTAGTGTTTCAGATTGGAAACCTTTGGAGATAGAATTATATCTGAAGGGAATAGAAATGTTTGGGAGAAACAGTTGCCTTATATCTCGGAACTTACTTGCTGGATTGAGGACTTGCGAGGAAGTTGCTAGATACATGTATGCTGAAGCGTTAATGCCGCATGGATCTATGGGCGAAAATGCAGGATTTGATGCAATGTCCACTGACAATAAGACGCCATCAAGGCCGCGGAAGGTGCCAAGAAAGAACAAAGCTAAGAGGTTCTCTTCAAAAGCCGCGGGACTTCCATCTACATGGAAACAAGTTATTGATGCAGGGAATAAAAGAAAATATAAGCAGTATACACCTTGTGAATGTAAAGGAACGTGTGGAAAACAATGTTCATGTCTTGTTGGTGGATATTTCTGCGAAAAATATTGCGGGTGTTCGATGCTTTGTAGAAATCGATTTGGAGGATGTCATTGTAATAAGACTCATTGTAGAAGTAGGCATTGTCCATGTTTTGCAGCATTAAGAGAATGTGACCCAGATGTATGTAAAAATTGTTGGGTTAGTTGTGGTGATGGTTCATTAGGAGAGTCATCTCATCGTGCAGAGGGTCAATGTGAAAATATGAATATGCTTTTAGGGAAAAAGAAACATAAGATTCTTTGGGGAAGGTCTGATATTACTGGATGGGGAGCATTCTTAAAGAACCCTGCAAACAAAAATGATTTTCTAGGAGAGTACACAGGTGAACTAGTCTCTAACGTAGAAGCTGAGAAACGTGGAAGTTTTTATGATCGTACAGGCTCTTCATCTTTCCTTTTCAACTTGAACGATACATATTGTCTTGATGCTTATCGCAAAGGAAACAAGTTGAAATTTGCAAACCACTCATTAACCCCCAATTGCTATGCAAGGGCTATGCTTGTTGGTGGGGACCATCGAGTAGGAATATATGCAATGGAAGACATTAAGGCTGGTGAGGAGATCCTCTATCATTACCACTATCATCAGGACCAGCAGCAACCACCATGGCTTGTTAAGCTTTTAGATGAAGCTTCTTCCAAGAAAAATAATGATCCAACATATTCTCAAGGAAAAGGCAAAAAACACCAGTCTCATTGA 2184 0.3851 MVSNSPGSAFGSQEKHGGGSSNTRQTLGNKLNLLKKQIQKERIESIKEKIQRNGKNLKCQLSEVMLVISRNESLQSAENTLNMLSSRMNRPQRKFNGCISRVSVEGDRINNPDASLVISVKMVYIKRLPPFTFWTNLTRNELMTEDQSVFRTRYINYDHHGGETLITGISDTEEEPEEPKEHKKVKRDFSEGEDRFLRMVFEEHDLTEEVLSIVSDIIGGTSSEIKERYEHIKDKERNSKDCGESGSHTEIRLNKSLSVTLDGFDHLLCRQCMIFDCSVHGCSQKFIYPNEKQNVWSEPEGDRKPCGDYCHLNNKDATISDSMRDLNLDAACNEEQHVMDETELNQMSNSMEGQIEEDSSVSDWKPLEIELYLKGIEMFGRNSCLISRNLLAGLRTCEEVARYMYAEALMPHGSMGENAGFDAMSTDNKTPSRPRKVPRKNKAKRFSSKAAGLPSTWKQVIDAGNKRKYKQYTPCECKGTCGKQCSCLVGGYFCEKYCGCSMLCRNRFGGCHCNKTHCRSRHCPCFAALRECDPDVCKNCWVSCGDGSLGESSHRAEGQCENMNMLLGKKKHKILWGRSDITGWGAFLKNPANKNDFLGEYTGELVSNVEAEKRGSFYDRTGSSSFLFNLNDTYCLDAYRKGNKLKFANHSLTPNCYARAMLVGGDHRVGIYAMEDIKAGEEILYHYHYHQDQQQPPWLVKLLDEASSKKNNDPTYSQGKGKKHQSH 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04662 727 CDD SET_EZH 572 689 - -
Trre14g04662 727 CDD SANT 364 405 IPR001005 -
Trre14g04662 727 ProSiteProfiles CXC domain profile. 443 557 IPR026489 -
Trre14g04662 727 Gene3D SET domain 472 690 IPR046341 -
Trre14g04662 727 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 334 725 IPR045318 GO:0006338|GO:0042054
Trre14g04662 727 FunFam Putative histone-lysine N-methyltransferase EZH2 472 690 - -
Trre14g04662 727 SMART set_7 572 694 IPR001214 GO:0005515
Trre14g04662 727 SMART CXC_2 470 510 IPR033467 -
Trre14g04662 727 SMART CXC_2 511 543 IPR033467 -
Trre14g04662 727 MobiDBLite consensus disorder prediction 1 29 - -
Trre14g04662 727 SMART sant 185 235 IPR001005 -
Trre14g04662 727 SMART sant 360 410 IPR001005 -
Trre14g04662 727 MobiDBLite consensus disorder prediction 709 727 - -
Trre14g04662 727 Coils Coil 24 44 - -
Trre14g04662 727 ProSiteProfiles SET domain profile. 572 688 IPR001214 GO:0005515
Trre14g04662 727 SUPERFAMILY SET domain 466 694 IPR046341 -
Trre14g04662 727 Pfam CXC domain 510 541 IPR041355 -
Trre14g04662 727 MobiDBLite consensus disorder prediction 422 444 - -
Trre14g04662 727 MobiDBLite consensus disorder prediction 708 727 - -
Trre14g04662 727 Pfam SET domain 583 687 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04662 Trre-Chr14 54288218 54293959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04662 560 687 C2H2 Transcription Factor Family AT2G23740 31.724 1.30e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre14g04662 SET 2.1e-11 No_clan