Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04652 ATGGAAGAAATTGTCTTGCTAGTCGATGATTTGAGGTTACTTTCTGGAATTTCTCACTGTAGAATATGCCATGAAGAAGAATTTGAAAGCTCCAAAACCTTGGAAGCACCTTGTTCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGTATACAAAGATGGTGTAATGAAAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAAGTCCTCCTCCTAAGAAGTCAGAGATAAATGATGAAGCAATGTCCATCAGGGATGAGGAAGAACCTTCAGACACAAGAAGAGAAAATGTAGTGGAAGGAATTGTAATAGAAAGTGATTGCAGTTCTACAGCTGACAGGACCGCGTCTCACTGTCGATCACTTGCATTAGCTTTTACAATTGTGTTACTAGTAAGACATTGTTTGGTTGTTCCTACAAGTGGAGCGGAAGATTACCCATTTACACTTTTTACCGTCATCGCACTAAAGGCTTGTGGAATTATTATACCAATGTACATAGTTACTAAGACAATCGGTGTCATTCTGAATAGCATTCGGCGCTATAGAGGTTCTGACTACGATACATCATTTTCTGATGAAGATGGCAGAAATGAAGCGTTACATGAAGAAAATGTAATATATTCGTAG 654 0.3807 MEEIVLLVDDLRLLSGISHCRICHEEEFESSKTLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTSPPPKKSEINDEAMSIRDEEEPSDTRRENVVEGIVIESDCSSTADRTASHCRSLALAFTIVLLVRHCLVVPTSGAEDYPFTLFTVIALKACGIIIPMYIVTKTIGVILNSIRRYRGSDYDTSFSDEDGRNEALHEENVIYS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04652 217 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Trre14g04652 217 Pfam Protein of unknown function (DUF3675) 73 180 IPR022143 -
Trre14g04652 217 MobiDBLite consensus disorder prediction 77 103 - -
Trre14g04652 217 CDD RING_CH-C4HC3_MARCH 20 67 - -
Trre14g04652 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Trre14g04652 217 SUPERFAMILY RING/U-box 18 72 - -
Trre14g04652 217 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Trre14g04652 217 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Trre14g04652 217 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 189 IPR033275 -
Trre14g04652 217 SMART ringv_2 19 68 IPR011016 GO:0008270
Trre14g04652 217 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04652 Trre-Chr14 54209605 54211986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04652 20 67 C3H Transcription Factor Family AT2G37950 44.898 5.89e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04652 - - mtr:11420992 379.022