Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04642 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGTTTGAAGAAGGGAAGGTGGACTGCAGAAGAGGATGAAATTTTGACCCAATATGTTAAGACCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTACTTAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAACTATTTGAGAGCTGATCTCAAAAGGGGAAATATTTCTTCTGAAGAGGAAAATATTATTGTCAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCGTTGATTGCAAGTCACTTACCGGGAAGAACAGACAACGAGATAAAAAACTACTGGAACTCTCACTTGAGTAGAAAAGTTTACAGCTTCAAAGGAACATCAACAAATTATAATGATTCCGATAATACTAAAGAGATGCCCTTGCAACAAGGGAATGTAGTTGACACACCTCCCAAACGTAGAGGTGGTAGAACTAGCAGGTGGGCCATGAAGAAGAATAAACTCTATGCCCAAAATATTTCCCAAAGTCCAAAATTACAAATAAGTGAAGCTGCTGCAATTACACTTCCACCCACCCCTACATTTGAGAGTGAGAAATTGTCTACAAGGGTAATAAAGGAATTCATGGCCGTGGACCCCGAAAATGGACCGTCTTCTAGTGGCGAAGATAGCCCAAGTGGATCACATTTTCCGTGCATTGACGGTAAAAATATGGAAACTGATCGCGACCAAATGTTGGGACCGTATCCAAAGGTCGGCATTAATGACCGCGAGGTAGATTTTAATGATATTGTTATGGACACTTGCGAGGTGGAAGAAGAAAAAAAAAGTAATGATGAAAATGTGGTTGTGAATAATGAAAGAGTGGTGGGGGACAAAGGCACTAACACAAATGGAACAAGGGACCTAGAGAGTAATAGTAATATGGCAAATTATGGTACGAATGCGGAGTTAAATTCTTCTTCAATGCCTTTGGATTTGGATGATAATTTAGATTGGGAGAGTGTGATGCCTTTATTGAATCAGAAAGGACAATCATTGTCATGGGATCAAAGTGAAAACATGTTGGCTTGGTTATGGGATGATGATGAATGGGAAAAAGATTTTCAGAAATTGCGAGAGATTGACCCTCAGAAGCAAAATGCTATGGTTTCTTGGTTTTTGTCTTGA 1158 0.399 MGRAPCCEKVGLKKGRWTAEEDEILTQYVKTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISSEEENIIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSFKGTSTNYNDSDNTKEMPLQQGNVVDTPPKRRGGRTSRWAMKKNKLYAQNISQSPKLQISEAAAITLPPTPTFESEKLSTRVIKEFMAVDPENGPSSSGEDSPSGSHFPCIDGKNMETDRDQMLGPYPKVGINDREVDFNDIVMDTCEVEEEKKSNDENVVVNNERVVGDKGTNTNGTRDLESNSNMANYGTNAELNSSSMPLDLDDNLDWESVMPLLNQKGQSLSWDQSENMLAWLWDDDEWEKDFQKLREIDPQKQNAMVSWFLS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04642 385 MobiDBLite consensus disorder prediction 127 154 - -
Trre14g04642 385 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g04642 385 SMART sant 66 114 IPR001005 -
Trre14g04642 385 SMART sant 13 63 IPR001005 -
Trre14g04642 385 MobiDBLite consensus disorder prediction 207 234 - -
Trre14g04642 385 CDD SANT 16 61 IPR001005 -
Trre14g04642 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre14g04642 385 Gene3D - 70 140 - -
Trre14g04642 385 FunFam Myb transcription factor 71 116 - -
Trre14g04642 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre14g04642 385 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g04642 385 CDD SANT 71 112 IPR001005 -
Trre14g04642 385 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre14g04642 385 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre14g04642 385 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g04642 385 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 193 - -
Trre14g04642 385 FunFam Myb transcription factor 11 67 - -
Trre14g04642 385 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04642 Trre-Chr14 54093017 54096420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04642 1 176 MYB Transcription Factor Family AT5G49330 65.946 3.42e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g04642 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04642 K09422 - gmx:100793350 330.487