Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04637 ATGGAGGATTCTGAGGCCAAATCTGCTGAAAACAACCAACAAACTGAAAAAGTGTGTAGTTTTTTCCGAAAACCAGTTAATAAGAAGAACATTAGGAAGCGAAATGTTGATAATGAAGATAATGAGGATGATTCGAATAACGAAGAATCTTTGATGCATGTTCAGAAAAAGAGTATGAAGCCTGATAATAAGCTGTTCTTTTCCTCTGGTTCTTCAAAAAGCTCTGCATCTACTGAGCGGAACGAAGAATCTGAGAAACATGGCTTTCATTTTGAGTCATCCAAAGAGATTCAAGTTCAACATGACAGCAAAGCAACCGCAACTTTAGAGACTGAGACTGATTTTTCGAATGATGCTCGTGCTATCCGTGAAAGAGCTCTTAAGCAAGCATCGGAAACTCTTAAGGGAAAGGGAACTGGCTCCGAGGATGGAAAATTATACAAGGGAATGAATAATTACAAAGATCATAAGGCTGGATTTCGGAGAGAGCACACAATTTCTGGTGAAAAGGCTGGTGGGTCACACGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCTAGATTTGATTATCAGCCTGATATATGCAAAGATTATAAGGAAACTGGGTATTGTGGCTATGGCGATTCGTGTAAATTTATGCATGATCGAGGTGATTACAAATCTGGTTGGCAGATGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGCGATTGGCTGCAGGTGAGGATGCCGAAGAGGAGGGTGCCAATTTGAATGATGATGACGATGACGACGATGATGCATTACCATTTGCATGTTTCATTTGTAGAAATCCATTTGTGGATCCTGTCTCAACGAAGTGCAAACACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAACCAACGCTTGGTATTTTTAACGTTGCTCACGAAATACGGAAGAAGATGGCTGAGGATAAATAA 990 0.4071 MEDSEAKSAENNQQTEKVCSFFRKPVNKKNIRKRNVDNEDNEDDSNNEESLMHVQKKSMKPDNKLFFSSGSSKSSASTERNEESEKHGFHFESSKEIQVQHDSKATATLETETDFSNDARAIRERALKQASETLKGKGTGSEDGKLYKGMNNYKDHKAGFRREHTISGEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARKMRLAAGEDAEEEGANLNDDDDDDDDALPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04637 329 Gene3D - 189 223 - -
Trre14g04637 329 FunFam Zinc finger CCCH domain-containing protein 1 189 223 - -
Trre14g04637 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Trre14g04637 329 FunFam RING finger protein 113A 268 327 - -
Trre14g04637 329 MobiDBLite consensus disorder prediction 78 99 - -
Trre14g04637 329 SUPERFAMILY RING/U-box 269 312 - -
Trre14g04637 329 PANTHER ZINC FINGER PROTEIN 183 11 329 IPR039971 -
Trre14g04637 329 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Trre14g04637 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 327 IPR013083 -
Trre14g04637 329 MobiDBLite consensus disorder prediction 1 100 - -
Trre14g04637 329 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Trre14g04637 329 ProSitePatterns Zinc finger RING-type signature. 285 294 IPR017907 -
Trre14g04637 329 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Trre14g04637 329 MobiDBLite consensus disorder prediction 62 77 - -
Trre14g04637 329 ProSiteProfiles Zinc finger RING-type profile. 270 308 IPR001841 -
Trre14g04637 329 Pfam Zinc finger, C3HC4 type (RING finger) 269 311 - -
Trre14g04637 329 CDD RING-HC_RNF113A_B 266 316 - -
Trre14g04637 329 SMART ring_2 270 307 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04637 Trre-Chr14 54082068 54083299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04637 2 329 C2H2 Transcription Factor Family AT1G01350 67.988 1.08e-163 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre14g04637 zf-C3HC4_3 3.3e-08 CL0229