Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04626 ATGAGAACACGACTACAACAATTGCATGTAGACAAAAATGAGCAGGAACTTATGGGTTGCGGAACTAAAATTTCGGGTCAATCAGGCTCGTCGAGCAGGAGTGAGCAGACGACTGGGATACTTACCGGTGATAATGCTGCGCTCGAATTAAACCATCTTGACATACATGACAATGATGCTGGATCACGGGGAGCAGTTGTTCGACACAGTTGCAAGAAGAAAAAGAAGGGCCAACAACAGGTGTCTGAAGTTACCATGAAAGTGTTCGAAAAGATAGAAAGGAAGGGAAAAACAACTTTCAATGAGGTGGCAGATGAACTTGTGGCTGAACTTTCTGATCCAATGAATAGTGTTTTGTCCCCCGATAAGAAACAATATGATGAGAAAAACATCCGTCGAAGGACCTATGATGTTCTGAATGTTCTCGCGGCAACTGATATTATTTCCAAGGATAAAAAGGAAATAAAATGGAAGGGTCTTTCTACTCCTAGTCCTATTGAGGAGCTAAAGACGGAGCGTCTTGGGATCAGGAATAGAATTGAAAGCAAAGCATCCTATCTAAAGGAGCTTGAGGAACAATTTGTAGGTCTTAAGAACCTTGTTCAACGAAATGAGCAACTATATAGATCAGAAAATCCTCCCAACGGAGGTTTATCTTTACCTTTTGTTCTGGTACAGACGCATCCTCATGCAACTGTTGAACTTGAAGTGGAAATATCAGAAGACAATCAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCATTTTCAACTGTATGATGACAATTATGTGCTCAAAGCAATGGAACTTTGTGATAGACCTCAGAGTGATATTGTTACGCTTAATGTTACGGAAGAAGGGGAAGGTTCTAGCTTGTCAGGCTTGCATCAGTTACAGGTTCTTCCTTCAGTTCCTGGAATACTAAAGAACAATACGATGGATTCAAACAAAAGGCGCAAATGTGGTTCGAGTTTGACATTATCTGGTATTACTAATGTTACTTCTTCATCATTGCGTTCACAAGTGTCCAACAACAATGTGTTTCGCAAACCCTTGCCTATTGGGCCTGGTAAATATGTTCTCAAGCACCCCAGAAGCCCACATAGAAGATACGAAAATTCTCCAACGAATTTCGACATATCTAACAATAAGGAAATATATGTGGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCTGATAATAATTCTGTGTCCAGCAATGTGTTTCGAAAACCTTTGCTCAAGCGCCCCAGAAGCCTACATAGAAGAGACGAAAGTTCTCCAATGAATTTCGACATATCTAACAATAAGGAAATATATGTAGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCAGACAATAATTTGGGTATGTCTTACACCATACAATACTTTAACTTTTAA 1416 0.3976 MRTRLQQLHVDKNEQELMGCGTKISGQSGSSSRSEQTTGILTGDNAALELNHLDIHDNDAGSRGAVVRHSCKKKKKGQQQVSEVTMKVFEKIERKGKTTFNEVADELVAELSDPMNSVLSPDKKQYDEKNIRRRTYDVLNVLAATDIISKDKKEIKWKGLSTPSPIEELKTERLGIRNRIESKASYLKELEEQFVGLKNLVQRNEQLYRSENPPNGGLSLPFVLVQTHPHATVELEVEISEDNQDMQLVHFDFNSTHFQLYDDNYVLKAMELCDRPQSDIVTLNVTEEGEGSSLSGLHQLQVLPSVPGILKNNTMDSNKRRKCGSSLTLSGITNVTSSSLRSQVSNNNVFRKPLPIGPGKYVLKHPRSPHRRYENSPTNFDISNNKEIYVECNENGEEYDVPDNNSVSSNVFRKPLLKRPRSLHRRDESSPMNFDISNNKEIYVECNENGEEYDVPDNNLGMSYTIQYFNF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04626 471 Gene3D Transcription factor DP 165 291 IPR038168 -
Trre14g04626 471 Pfam E2F/DP family winged-helix DNA-binding domain 84 159 IPR003316 GO:0005667|GO:0006355
Trre14g04626 471 SUPERFAMILY "Winged helix" DNA-binding domain 82 160 IPR036390 -
Trre14g04626 471 Coils Coil 187 207 - -
Trre14g04626 471 CDD DP_DD 166 270 IPR014889 -
Trre14g04626 471 SMART E2F_TDP_2 76 159 IPR003316 GO:0005667|GO:0006355
Trre14g04626 471 FunFam Transcription factor-like protein DPB 163 292 - -
Trre14g04626 471 Pfam Transcription factor DP 166 278 IPR014889 -
Trre14g04626 471 SMART DP_2 164 316 IPR014889 -
Trre14g04626 471 SUPERFAMILY E2F-DP heterodimerization region 166 280 IPR037241 -
Trre14g04626 471 PANTHER TRANSCRIPTION FACTOR DP 28 278 IPR015648 GO:0005667|GO:0051726
Trre14g04626 471 FunFam Transcription factor Dp-1, a 71 164 - -
Trre14g04626 471 Gene3D - 69 164 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04626 Trre-Chr14 53955214 53958776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04626 75 271 E2F-DP Transcription Factor Family AT5G02470 43.415 1.92e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre14g04626 DP 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04626 K04683 - zju:107414839 358.992